1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCCAAGTTCATTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggccaccctttcttgtgtaagagtgttcttttgtctggctggaaacaagtaaaacttacaaggaaaaaaaagaaatgccatgactttaatcgtg...
species | Zea mays |
transcript | AC217358.3_FGT005 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCGGAGTTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|9733307|gb|BE512059.1|BE512059
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCGGAGTTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|78081933|gb|DV510345.1|DV510345
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTTGCCA-CAACCCEST: gi|148982739|gb|EE028558.2|EE028558
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATT-GCCAACAACCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCANGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTTGCCA-CA-CCCEST: gi|71308360|gb|DR790410.1|DR790410
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATT-GCCAACAACCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|149112958|gb|EE295743.2|EE295743
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCCACAACCCCEST: gi|18654880|gb|BM499685.1|BM499685
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCGGAGCTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|78084473|gb|DV512866.1|DV512866
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGEST: gi|19437062|gb|BM953472.1|BM953472
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGG
EST: TTGNTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCGGAGCTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|31355780|gb|CD440137.1|CD440137
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|60398117|gb|DN230933.1|DN230933
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|211504558|gb|FK951745.1|FK951745
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|148987626|gb|EE031500.2|EE031500
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|76011854|gb|DT939024.1|DT939024
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGEST: gi|78079465|gb|DV507877.1|DV507877
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAG
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|18654881|gb|BM499686.1|BM499686
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCGGAGCTGATTGGCCAAGCCATTGCCAACAACCCCEST: gi|211504561|gb|FK951748.1|FK951748
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGNCAAGCCATTGGCAACAACCCCEST: gi|31356533|gb|CD440890.1|CD440890
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
EST: --GTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAG GGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
genomic: TTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggcc ... atttgaacagGGTGAGGCTAAGAGCGCTGAGTTGATTGGCCAAGCCATTGCCAACAACCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCCAAGTTCATTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggccaccctttcttgtgtaagagtgttcttttgtctggctggaaacaagtaaaacttacaaggaaaaaaaagaaatgccatgactttaatcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
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