1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAGTTGAGGAGAAAATGGAGGACTATTTCATATTTTGGATTGGACAAGATAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAGgtgtgttttcttcatcctcattttatgtctagtaggaggattgttttaatttgtgcaggccctgtactcttgtttttctaagcttgtattagtttttctg...
species | Zea mays |
transcript | AC217358.3_FGT003 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAG TTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGAEST: gi|78107175|gb|DV525593.1|DV525593
genomic: TAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAGgtgtgttttc ... ttttttgcagTTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGA
EST: TAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAG TTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGAEST: gi|32945632|gb|CF050451.1|CF050451
genomic: TAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAGgtgtgttttc ... ttttttgcagTTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGA
EST: TAGTGCTTACCTTCAATAAATGTGAAATAG TTAGATATGATGCAATAGAAAATCAACTCACAACGGACGTCTCTCATCTGAEST: gi|60396473|gb|DN229342.1|DN229342
genomic: TAGTGCTTACCTTCAATAAATGTGAAATAGgtgtgttttc ... ttttttgcagTTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGA
EST: TAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAG TTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGAEST: gi|6021326|gb|AW066254.1|AW066254
genomic: TAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAGgtgtgttttc ... ttttttgcagTTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGA
EST: TAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAG TTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGA
genomic: TAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAGgtgtgttttc ... ttttttgcagTTAGATATGATGCAATAGAAAATCAACTCACAGCGGACGTCTCTCATCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGTTGAGGAGAAAATGGAGGACTATTTCATATTTTGGATTGGACAAGATAGCTCAGCATTTGCCAACATAGTGCTTACCTTCAATAAATGTGAAATAGgtgtgttttcttcatcctcattttatgtctagtaggaggattgttttaatttgtgcaggccctgtactcttgtttttctaagcttgtattagtttttctg
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