ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

AGGAGCAGCTGGAAGAGCGTATGTCTCGCATTAAGGAAGATCCAGCTATGAAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcatatctactgtagatatgttttgtttatagacttcgtttgtgacattcctgcctgtctgcatctag

Basic information

species	Zea mays
transcript	AC215244.3_FGT002
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AC215244.3_FGT002 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g42690.1 (Oryza sativa), 5'ss of exon 4

AGGAGCAGCTGGAAGAGCGTATGTCTCGCATTAAGGAAGATCCAGCTATGAAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcatatctactgtagatatgttttgtttatagac-ttcgtttgtgacattcctgcctgtc-tgcatctag---------
| |   || | ||||||||| | ||||| || ||||||||||||||  |||| |||||| | ||||||||||||| ||| |  ||| ||||| |||| ||||| ||||| | ||||   |||    |  |  |||   | |  |||| | || |       | || ||| | |           
ATGCAAAGATAGAAGAGCGTGTTTCTCGTATGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGCTGCACTGATAAAgtaggtcatgtttactactgatgatatgcgaatatgaccatatgtttatcacttattgatgtatcctgcttttgctcataatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|148987136|gb|EE030964.2|EE030964

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTC

EST: gi|33101202|gb|CF061162.1|CF061162

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|61119717|gb|DN560678.1|DN560678

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|60398619|gb|DN231435.1|DN231435

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|91877255|gb|EB407212.1|EB407212

EST:     AGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGNCA-TGATGAA                         GTACTGGAACGACCCTGATACTCTTTCAAAAGAT-GGTGAGGCAATGGGAG
genomic: AGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTG-CAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTT-CAAAAGATTGGTGAGGCAATGGGAG

EST: gi|67014523|gb|CO443272.1|CO443272

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCA-TGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGANGGCA-TGGGAG
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGA-GGCAATGGGAG

EST: gi|20811188|gb|BQ295666.1|BQ295666

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|60352130|gb|DN219103.1|DN219103

EST:     TGATGAGTTAGAGAATGGGGGCCTTTTTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: TGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|149101806|gb|EE287398.2|EE287398

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|148991451|gb|EE032956.2|EE032956

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|149096549|gb|EE182298.2|EE182298

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAAT
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAAT

EST: gi|149073854|gb|EE162176.2|EE162176

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|149110681|gb|EE190549.2|EE190549

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|148986784|gb|EE030580.2|EE030580

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|149100032|gb|EE186084.2|EE186084

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|149089140|gb|EE178326.2|EE178326

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|78115069|gb|DV533457.1|DV533457

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|87152225|gb|DY397014.1|DY397014

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|60355986|gb|DN222959.1|DN222959

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|60341985|gb|DN208958.1|DN208958

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|149096548|gb|EE182297.2|EE182297

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|148934581|gb|EC878630.2|EC878630

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGGCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

EST: gi|71428233|gb|DR809283.1|DR809283

EST:     AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAA                         GTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC
genomic: AAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 503

AGGAGCAGCTGGAAGAGCGTATGTCTCGCATTAAGGAAGATCCAGCTATGAAGTCAATTCTTGATGAGTTAGAGAATGGGGGCCCTTCTGCAATGATGAAgtaagtcata ... ctgcatctagGTACTGGAACGACCCTGATACTCTTCAAAAGATTGGTGAGGCAATGGGAGCTAGCTTCCCATTTGGTGCAGGTTCTTCTGCTGAACCTTCTGGTACTGAA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 751

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 732