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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatttagataaaagctacgtgcacaatgacaaatttatttagtttctaatatttccatcactttacag

Basic information

species Zea mays
transcript AC205703.4_FGT004
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 12
TCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatttagataaaagctacgtgcacaatgacaaatttatttagt-ttctaatat---ttccatcactttacag
|||||| | |||||||||||||| ||||| ||||| || |||| |||||| ||||||||||||||||||||||| |||||| | |  |      |  || |  |||| ||||   ||||| |||  | |||| ||||   |  ||||||| |||||
TCAAATGTTGCAAAGTTTGAGGGGCATGTTGGACCAGTGACTGCTATGTCCTTCTCTGAAAATGGTTACTTCCTTGCGgtatgaatctctccatagtgcaatctgcaaaatgttgaatttcttttttattctgatatatgtatcatcactgtacag

upper sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 4
lower sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
TCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatttagataaaa-gctacgtgcacaatgacaaatttatttagtttctaatatttccatcactttacag--------------
 ||||| | || |||||||| || ||    ||    || || | ||| |||||||||||||||||||||||||| |||||  ||| |||  | ||||  | |   |    |  |||  || | |||   |   ||   |   |  ||||                  
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag

upper sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 4
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 14
TCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaattt---agataaaagc---tacgtgcacaa-tgacaaatttatttagtttctaatatttccatcactttacag
 ||||| | ||||  ||||| || || || ||  | || |||| ||| |||||||| ||||||||||||||||| |||||| ||  |||   |  || |||    || |||   || ||||| |  | | |  ||| | ||  ||  ||   ||||   
GCAAATGTGGCAAGATTTGACGGGCACGTTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGgtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgcttg-atgtttttag--