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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAGATTATAACGAAGATAATGCCAGTGGTGAGACACAACCTTTCAGAGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattctacacagcctcagtgcatttgcatgcatagttatacatgctatcaatgtttatgtgatcttattattagattcgttatttcttttacgag

Basic information

species Zea mays
transcript GRMZM2G009849_T01
intron # 34
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440205|gb|DR821255.1|DR821255
EST:     AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCT---                         CAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
genomic: AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
EST: gi|211104807|gb|FL044860.1|FL044860
EST:     AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAG                         --G-TACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
genomic: AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
EST: gi|60347986|gb|DN214959.1|DN214959
EST:     AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCT---                         CAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
genomic: AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
EST: gi|76285312|gb|DV024880.1|DV024880
EST:     AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCT---                         CAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
genomic: AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
EST: gi|83278453|gb|DV942461.1|DV942461
EST:     AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCT---                         CAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
genomic: AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
EST: gi|67019308|gb|CO448057.1|CO448057
EST:     AGGTCAAGGTGACGCCACTGACCAACANACTGATAGATACCAGACCTCAG                         --G-TACATTGGATGCTCTTTAGGAAAAGGATGAAA-GCATTCAAGCTGCA
genomic: AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTT-AGGGAAAGGATGAAAAGCATTCAAGCTGCA
EST: gi|60398867|gb|DN231683.1|DN231683
EST:     AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCT---                         CAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
genomic: AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
EST: gi|211409478|gb|FL448716.1|FL448716
EST:     AAACTGATAGATACCAG-CCT--T                         CAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
genomic: AAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG
EST: gi|67011174|gb|CO439923.1|CO439923
EST:     AGGTCAAGGTGACGCCACTGACCAACANACTGATAGATACCAGACCTCAG                         --G-TACATTGGATGCTCTTANGGAAAGGATGAANAGCATTCAAGCTGCAG
genomic: AGGTCAAGGTGACGCCACTGACCAACAAACTGATAGATACCAGACCTCAGgtccccattc ... cttttacgagCAGGTACATTGGATGCTCTTAGGGAAAGGATGAAAAGCATTCAAGCTGCAG