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AGAACCTTTTTTTATGGTTATTCGTGAGGATGAGACCCTATCTTCTATCAAAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattctttatatgtttccatgtgtaggttcccgacttcccgttatgttttgttcttaaaccattttagcgaaagggcctctagctgagttggttatgt...
species | Zea mays |
transcript | GRMZM5G864266_T01 |
intron # | 32 |
splice site | 5' |
intron type | U2 |
EST: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAG TGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCAEST: gi|61118763|gb|DN559724.1|DN559724
genomic: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattcttt ... atttggacagTGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCA
EST: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCANAG TGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCAEST: gi|60400274|gb|DN233081.1|DN233081
genomic: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattcttt ... atttggacagTGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCA
EST: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAG TGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCAEST: gi|78106266|gb|DV524684.1|DV524684
genomic: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattcttt ... atttggacagTGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCA
EST: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAG TGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCAEST: gi|60394863|gb|DN227732.1|DN227732
genomic: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattcttt ... atttggacagTGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCA
EST: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAG TGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCAEST: gi|211394943|gb|FL031667.1|FL031667
genomic: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattcttt ... atttggacagTGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCA
EST: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAG TGGAAGTTTGCATACATTTEST: gi|67014431|gb|CO443180.1|CO443180
genomic: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattcttt ... atttggacagTGGAAGTTTGCATACATTT
EST: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAG TGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCAEST: gi|67020350|gb|CO449099.1|CO449099
genomic: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattcttt ... atttggacagTGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCA
EST: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAG TGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCA
genomic: AAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattcttt ... atttggacagTGGAAGTTTGCATACATTTCACTCGGTCGTCCTGACTATTTTGAAGATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACCTTTTTTTATGGTTATTCGTGAGGATGAGACCCTATCTTCTATCAAAGAACGTATACAGAAAAAGCTTAAGGTTCCAGATGAGGATTTCTCAAAGgtaattctttatatgtttccatgtgtaggttcccgacttcccgttatgttttgttcttaaaccattttagcgaaagggcctctagctgagttggttatgt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT