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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGATGGAGTAAGGATTCTGCGTCTGCAGAATGAAAGCCGATCTGATGCTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAGgtggagtatttgttcttcaataatttaagaatcataacagaacattagcggacgaatcttgcttcaccttttagacaaatacatactggcattggattgt...

Basic information

species Zea mays
transcript GRMZM2G132712_T01
intron # 30
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5846745|gb|AI999828.1|AI999828
EST:     CTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAG                         ATCTTCAATGAGTTCAATGCACGAAAACCCGAGGAAAAGAATGTCTTCAAA
genomic: CTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAGgtggagtatt ... tttatgccagATCTTCAATGAGTTCAATGCACGAAAACCCGAGGAAAAGAATGTCTTCAAA
EST: gi|5296205|gb|AI782885.1|AI782885
EST:     CTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAG                         ATCTTCAATGAGTTCAATGCACGAAAACCCGAGGAAAAGAATGTCTTCAAA
genomic: CTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAGgtggagtatt ... tttatgccagATCTTCAATGAGTTCAATGCACGAAAACCCGAGGAAAAGAATGTCTTCAAA
EST: gi|6020890|gb|AW065818.1|AW065818
EST:     CTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAG                         ATCTTCAATGAGTTCAATGCACGAAAACCCGAGGAAAAGAATGTCTTCAAA
genomic: CTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAGgtggagtatt ... tttatgccagATCTTCAATGAGTTCAATGCACGAAAACCCGAGGAAAAGAATGTCTTCAAA
EST: gi|60340338|gb|DN207311.1|DN207311
EST:     CTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAG                         ATCTTCAATGAGTTCAATGCACGAAAACCCGAGGAAAAGAATGTCTTCAAA
genomic: CTGAGAAGATAACAAATACTTTCATCTTCAACACATTTGTATTTTGCCAGgtggagtatt ... tttatgccagATCTTCAATGAGTTCAATGCACGAAAACCCGAGGAAAAGAATGTCTTCAAA