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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatggagcacatat...

Basic information

species Zea mays
transcript GRMZM2G014805_T01
intron # 30
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014805_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 31
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatgga-gcacatat
||||||||||| ||||| |||||||||||||||||||||||||| || || || |||||| | ||||||||||| |||||||||||||||  || || |   |  |  ||     || ||  |||  |     | |   | || | | ||   ||    ||||  |  |  || ||    |   || |
AGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtgttggctaataatggtttttgcgtacaattcaaaactggcaa-gaaataatctgagtgtttaagatttaagagtgtaaatatctgtttattt

upper sequence: GRMZM2G014805_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 23
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatggagcacatat------
|| |||||||| |||||||||||||| ||||| ||||| |||||||| || || |   |  | ||||| || ||  | | ||| |||||  |  |    || ||||| ||   | | ||     |     || |  | |  || | | ||    || ||       |   |   ||   ||   | |      
AGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGgttagtga----attttctgatg---agtaagccttcttttgttttgggggtaaaaaact-tgcttttgtttacaccattcaaaattatatggcttttgttttcag

upper sequence: GRMZM2G014805_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA13G16040.1 (Glycine max), 5'ss of exon 12
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatggagcacatat------
|| |||||||| |||||||||||||| ||||| |||||||||||||| || || |   |  | ||||| || ||  | | ||| |||||  |  |    || |||||| |   | | ||     |     || |  ||   | | |||      || |||      |   |   ||   ||   | |      
AGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGgttagtga----attttctgtcg---agtaagctttcttttgctttggggtaaaatgcttgcttt--tgtttgcaccattcaaaataatatggcttttgttttcag

upper sequence: GRMZM2G014805_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 31
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaa-------tgctatattc---tgttgtaaaatg------agtgaaataaatgttcgacg-ttgt--aagattgtggaagtgcttgattgtattgcatagatggagcacatat-----------------------------------------
||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||   |  | ||||| || ||  | |  || |||||  | ||       ||| |||      | || | || |        ||    ||| ||||  | | ||||  |  ||| ||| | | || | || || |    || | |||   |  |                                         
AGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACTGATAATGCTCCTAAAAGATCATATGCTGTTAACCAGgtttgtaactttgcctgcaatagctgatttttatcaagtacattttggtcttttaattgttttatggttgtccactattctggtaatactgggttttaattttgaggttgagagaacttgttttattacaccattccaaattacatgcgttttgtttcag

upper sequence: GRMZM2G014805_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 31
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatggagcacatat-------------------------------------------------------------
||||||||||| |||||||||||||| || || |||||||||||||| || || |   |  | ||||| || ||  | |  || |||||  | ||   |   | |    | ||  |   | || || || || | | || |||  |||| |  ||  |  | | |  ||   | |  | |      |                                                             
AGGAGAGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTTAACCAGgtttgtaactttgcctgcaagagcaatttatattaagtacattttggtctttttaa--ttgttgtggttgtccactattctggtaatactgggttttagttttgaggttgagagaactttgttttattacaccatttcaagttgcatgcgttttgtttcag

upper sequence: GRMZM2G014805_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 31
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtga--aataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatggagcacatat---
|| |||||||| |||||||||||||| || || ||||| ||||||||| |||| |   |  | |||||||| ||  |||| |||||||||   || |||||      || ||||  | |||   |         |  |     || |      ||         ||  ||  |   |    |    |     
AGAAGAGATGTCTATGGTGCTTGGGAGCAGTATCTTGGTTTGGAGCACTCCGACAATGCTCCCAAAAGGTCATATGCAGCTAATCAGgtaa--aaggctat---taattataaacagggtggttagcggccccccccccccaaaaaaaaaaaaaaaaaaaaatctggttttaaccaacactgattttggacc

upper sequence: GRMZM2G014805_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 31
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaat---aaatgttcgacgttgtaagattgtggaagtgcttgat-tgtattgcatagatggagcacatat
|| |||||||| ||||||||||||||||| ||||||||  |||||||| | |||||  |  | |||||| ||||  |||| |||||||||   | || ||| |  | ||  ||  |  || |  |   |||   | |  | || || ||    |   || || || |  ||| | | | |     ||    
AGAAGAGATGTTTATGGTGCTTGGGAACAGTACCTTGGGCTGGAGCACTCTGATACTGCTCCTAAAAGGGCTTATGCAGCAAATCAGgta--tagtgatatgtattatttaaatctatgtaaggtttcaaagcattggtgctgcaaaatatctggtttggtttatgtcaatttctttgtttttttacca--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32944375|gb|CF049194.1|CF049194
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|22490260|gb|BU050183.1|BU050183
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|211029627|gb|FL157472.1|FL157472
EST:     GCTTGGAGCACACCGATACAACATCGAAAACGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|18654871|gb|BM499676.1|BM499676
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|60344321|gb|DN211294.1|DN211294
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|32833426|gb|CD973104.1|CD973104
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|18654872|gb|BM499677.1|BM499677
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCC
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCC
EST: gi|211029629|gb|FL157474.1|FL157474
EST:     GCTTGGATCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|87152609|gb|DY397398.1|DY397398
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|60400188|gb|DN232995.1|DN232995
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|78025615|gb|DV494002.1|DV494002
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|60400323|gb|DN233130.1|DN233130
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|211029628|gb|FL157473.1|FL157473
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATMAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|76019059|gb|DT946229.1|DT946229
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|32833288|gb|CD972966.1|CD972966
EST:     CACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: CACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|211029631|gb|FL157476.1|FL157476
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|37375117|gb|CF623972.1|CF623972
EST:     ACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: ACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|18963174|gb|BM660282.1|BM660282
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAGATTTATAATTGAGAAAACTT
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTT
EST: gi|166454773|gb|EG323323.1|EG323323
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCC
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCC
EST: gi|211029630|gb|FL157475.1|FL157475
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAAYTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|4827730|gb|AI668422.1|AI668422
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|32934161|gb|CF038973.1|CF038973
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|32940670|gb|CF045489.1|CF045489
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|33094794|gb|CF054788.1|CF054788
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|18661897|gb|BM501640.1|BM501640
EST:     GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
EST: gi|6760543|gb|AW324632.1|AW324632
EST:     GCTT-GAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAG                         AATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA
genomic: GCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 224

AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAAAGTTTCAATCGATTGACGGAGGCCTCGACAACAGTATGCCCAAGATGA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 198

AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAAAGTTTCAATCGATTGACGGAGGCCTCGACAACAGTATGCCCAAGATGA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 287

AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAAAGTTTCAATCGATTGACGGAGGCCTCGACAACAGTATGCCCAAGATGA


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 181

AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatg ... ttgtttgcagAATCGGCACACCTATGAGAAGCCCGTGAAAATTTATAATTGAGAAAACTTAAAGTTTCAATCGATTGACGGAGGCCTCGACAACAGTATGCCCAAGATGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACCGATACAACATCGAAAAGGTCTTACACAGCCAATCAGgtaggcaatgctatattctgttgtaaaatgagtgaaataaatgttcgacgttgtaagattgtggaagtgcttgattgtattgcatagatggagcacatat

- - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataaa