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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgccatttacgcaccctgagaaagaatatcactcctcatattttgtgatacatgtttttgtttcttagcacaaagggttaaatgaatgtgttgtccgcgccattgattcag

Basic information

species Zea mays
transcript GRMZM5G896731_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89248113|gb|DY619899.1|DY619899
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|78109136|gb|DV527553.1|DV527553
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCCTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|88756830|gb|DY540971.1|DY540971
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|71438321|gb|DR819371.1|DR819371
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|76293027|gb|DV032595.1|DV032595
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|89250808|gb|DY622594.1|DY622594
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|91053266|gb|EB163684.1|EB163684
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|78109135|gb|DV527552.1|DV527552
EST:     CCAGGGTATACCCCTGACTACACATTATTTCAAAGCACTCCTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|91050003|gb|EB160421.1|EB160421
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: gi|78085320|gb|DV513713.1|DV513713
EST:     CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG                         GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA