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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACATCCTTGGCTCTAGCTGCTGGCATTGGATTACTGGAAATGGTAGCTCTGATTGTTGGATCTGGGACCCTGATGAACATCATTGGTATTCCTGTTgtacgtaaaaccaatttattctcttgctcaggtttctaggatctatttcttctcttcaacttgatgttggcactgggtgttagtattctttagggtgttt...

Basic information

species Zea mays
transcript GRMZM5G890665_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G890665_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g01580.1 (Oryza sativa), 5'ss of exon 3
GTCAACATCCTTGGCTCTAGCTGCTGGCATTGGATTACTGGAAATGGTAGCTCTGATTGTTGGATCTGGGACCCTGATGAACATCATTGGTATTCCTGTTgtacgtaaaaccaatttattctcttgctcaggtttctaggatctatttcttctcttcaacttgat-gttggcactgggtgtta-gtattctttagggtgttt
 ||||||||||||||||||||||||||||| |||||  ||||||  || || |||||  |||| |||||||| ||  || ||||| | ||| | ||||| ||||||||  | ||||||||    |  |||| | |||||||| ||| | ||||||  ||| || | ||||  |       |   || |          | | 
CTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaag-ctaatttatttcagtattcagttatctaggatttatctgttctctgaaacatggttgttgatatctaaaatcgtgtgtagaactatcagct-