1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTTGCTATATTGCTGCTGGAGCTCAAGTGACAGCGATTGACTTGAGGACAATGAAGAAGGCTTCTGTCCTTGCACTCCAGAACCACAGAATACTTTCTTgtgagatgatgccttctgaatggttaatatgtactgccattatataatcattcaccatgataaattattgcaaactaacccctaatttatctcaaccctt...
species | Zea mays |
transcript | GRMZM5G884316_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATGAAGAAGGCTTCTGTCCTTGCACTCCAGAACCACAGAATACTTTCTT ACGGATACGTCAATGGCTGTGCAGTCCNNNNNNNTGAAGAGAAGGGAATTTEST: gi|76918443|gb|DV167297.1|DV167297
genomic: AATGAAGAAGGCTTCTGTCCTTGCACTCCAGAACCACAGAATACTTTCTTgtgagatgat ... atcattgtagACGGATACGTCAATGGCTGTGCAGTCCAAAAAAATGAAGAGAAGGGAATTT
EST: AATGAAGAAGGCTTCTGTCCTTGCACTCCAGAAACACAGAATACTTTCTT ACGGATACGTCAATGGCTGTGCAGTCCNNNNNNNTGAAGAAGAAGG-AATTEST: gi|78120001|gb|DV538385.1|DV538385
genomic: AATGAAGAAGGCTTCTGTCCTTGCACTCCAGAACCACAGAATACTTTCTTgtgagatgat ... atcattgtagACGGATACGTCAATGGCTGTGCAGTCCAAAAAAATGAAGA-GAAGGGAATT
EST: CCAGAACCACAGAATACTTTCTT ACGGATACGTCAATGGCTGTGCAGTCCNNNNNNNTGAAGAGAAGGGAATTTEST: gi|71431443|gb|DR812493.1|DR812493
genomic: CCAGAACCACAGAATACTTTCTTgtgagatgat ... atcattgtagACGGATACGTCAATGGCTGTGCAGTCCAAAAAAATGAAGAGAAGGGAATTT
EST: AATGAAGAAGGCTTCTGTCCTTGCACTCCAGAACCACAGAATACTTTCTT ACGGATACGTCAATGGCTGTGCAGTCCNNNNNNNTGAAGAGAAGGGAATTT
genomic: AATGAAGAAGGCTTCTGTCCTTGCACTCCAGAACCACAGAATACTTTCTTgtgagatgat ... atcattgtagACGGATACGTCAATGGCTGTGCAGTCCAAAAAAATGAAGAGAAGGGAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCTATATTGCTGCTGGAGCTCAAGTGACAGCGATTGACTTGAGGACAATGAAGAAGGCTTCTGTCCTTGCACTCCAGAACCACAGAATACTTTCTTgtgagatgatgccttctgaatggttaatatgtactgccattatataatcattcaccatgataaattattgcaaactaacccctaatttatctcaaccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG