1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCTCAGGGTGCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCAgtgagttattagttcatatgtatatttctgtaacatgtagttttacaattcatatgcacattggagttctatttgcagcataattaagcaacataaacaa...
species | Zea mays |
transcript | GRMZM5G878139_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCA GTCATTGGCTGGTCAATGTGGTTTGCAGAGTACCTCTTTTTGGAGAGGAGCEST: gi|211260012|gb|FK979863.1|FK979863
genomic: GCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCAgtgagttatt ... acttttgcagGTCATTGGCTGGTCAATGTGGTTTGCAGAGTACCTCTTTTTGGAGAGGAGC
EST: GCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCA GTCATTGGCTGGTCAATGTGGTTDMGCAGAGTACCTCTTTTTGGAGAGGAGEST: gi|211257591|gb|FK979862.1|FK979862
genomic: GCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCAgtgagttatt ... acttttgcagGTCATTGGCTGGTCAATGTGGTTT-GCAGAGTACCTCTTTTTGGAGAGGAG
EST: GC-TTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCA AEST: gi|211257591|gb|FK979862.1|FK979862
genomic: GCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCAgtgagttatt ... acttttgcag-
EST: GC-TTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCA AEST: gi|4647481|gb|AI622556.1|AI622556
genomic: GCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCAgtgagttatt ... acttttgcag-
EST: GCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCA GTCATTGGCTG
genomic: GCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCAgtgagttatt ... acttttgcagGTCATTGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTCAGGGTGCCTTGGAAGTACGCTCGCTGTCATGAAGAAGTCATCCAAGTTCCTTCCAgtgagttattagttcatatgtatatttctgtaacatgtagttttacaattcatatgcacattggagttctatttgcagcataattaagcaacataaacaa
- - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataaa