1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGAGCAGATGTCACACTGGCCTGAACAGCCAGTGAATGTAATAATCAATTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactgatcttatgatcctgtagctggtgcttgttgcaagtttcttcctgttacatatttttattttcctggctcagttatgaaaatactatttata...
species | Zea mays |
transcript | GRMZM5G876003_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCEST: gi|60395258|gb|DN228127.1|DN228127
genomic: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
EST: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCEST: gi|78093364|gb|DV521738.1|DV521738
genomic: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
EST: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCEST: gi|78074349|gb|DV502783.1|DV502783
genomic: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
EST: TCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCEST: gi|74240434|gb|DT648348.1|DT648348
genomic: TCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
EST: TCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCEST: gi|74235314|gb|DT643228.1|DT643228
genomic: TCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
EST: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCEST: gi|78093365|gb|DV521739.1|DV521739
genomic: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
EST: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCEST: gi|76919742|gb|DV167846.1|DV167846
genomic: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
EST: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCEST: gi|76923219|gb|DV169381.1|DV169381
genomic: TTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
EST: CAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTG GCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
genomic: CAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactga ... tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGAGCAGATGTCACACTGGCCTGAACAGCCAGTGAATGTAATAATCAATTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGgtaagactgatcttatgatcctgtagctggtgcttgttgcaagtttcttcctgttacatatttttattttcctggctcagttatgaaaatactatttata
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT