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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGATCCGTCGACAACAGCAAGGCAGCTAGCGCAGCAGCAGGAGGCCAGCATGAGGAAGGCGCGCGTCTCGGTGCGCGCGCGATCCGAAGCTCCCATCgtaaggaggagtttttgtttttcctttctctttctttctttctttctttctttcttctatctttctttattttttcctttctttctttctttctttctttcttctcatatggaagatgatcgtgggcag

Basic information

species Zea mays
transcript GRMZM5G871347_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G871347_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g14440.1 (Oryza sativa), 5'ss of exon 3
----GGCGGATCCGTCGACAACAGCAAGGCAGCTAGCGCAGCAGCAGGAGGCCAGCATGAGGAAGGCGCGCGTCTCGGTGCGCGCGCGATCCGAAGCTCCCATCgtaaggaggagtttttgtttttcctttctctttctttctttctttctttctttcttctatctttctttattttttcctttctttctttctttctttctttcttctcatatggaagatgatcgtgggcag
    | |||  | |  | ||| ||| | |     |||    |  ||||| |||| |||||||||||| |||||||| || ||||||||||||||||| || ||||||||          |      |   ||  |  |   | || | || |     | |      |||   ||  |||   |||  |                                             
CGCCGCCGGCGCGGCGGGCAAGAGCCATG--ATCAGCAAGCC--CAGGATGCCAACATGAGGAAGGCCCGCGTCTCCGTTCGCGCGCGATCCGAAGCGCCAATCgtaagaccccaccactagcaaccacatcgatcacaggcattttctcatcgagacgtgctgaattccaaatcgttttggttccgtgcag-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86472394|gb|DY238764.1|DY238764
EST:     GCATGAGGAAGGCGCGCGTCTCGGTGCGCGCGCGATCCGAAGCTCCCATC                         ATCGCCGACGGCTGCCAGTGGCGCAAGTACGGGCAGAAGATGGCCAAGGGC
genomic: GCATGAGGAAGGCGCGCGTCTCGGTGCGCGCGCGATCCGAAGCTCCCATCgtaaggagga ... tcgtgggcagATCGCCGACGGCTGCCAGTGGCGCAAGTACGGGCAGAAGATGGCCAAGGGC