Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAAGTTTGTTCTCAATTTGGACACAAACACATTCATACATATTGTCAGCTCACTCGAATCTGGCTTAAAAGGTCTAGATGCAGGGATATCATCACAGgtttgtctcaaatattccatcttgaatgatgaagctatattatatgatatttgtttagtgaagtagttaggctgaaactgtattggcttttatattatttgggctgatttatatcatgtttatcggcag

Basic information

species Zea mays
transcript GRMZM5G869993_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G869993_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g42050.1 (Oryza sativa), 5'ss of exon 24
TATCAAGTTTGTTCTCAATTTGGACACAAACACATTCATACATATTGTCAGCTCACTCGAATCTGGCTTAAAAGGTCTAGATGCAGGGATATCATCACAGgtttgtctcaaatattccatcttgaatgatgaagctatattatatgatatttgtttagtgaagtagttaggctgaaactgta-ttggcttttatattatttgggctgatttatatcatgtttatcggcag
|||||  |||||||||||||| || |||||||| ||| | |||||||||||| | || |||||||||||||||||||||||| ||||||||||| ||||||| |||  ||   || |  | || | || |  |   || ||    | |  |||||      |  ||    | || | | ||  ||    | | |  |||  | |  |                       
TATCACTTTTGTTCTCAATTTAGATACAAACACCTTCGTGCATATTGTCAGCACTCTTGAATCTGGCTTAAAAGGTCTAGATACAGGGATATCAACACAGgtatgtggcatg-atgc--tttttactgcttgaaaaatgttcctcgcttcttgtt----acaacagcatcggtggatcagtgcttaaactgtgtcctatcggcgaag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093809|gb|CF053803.1|CF053803
EST:     GCTCACTCGAATCTGGCTTAAAAGGTCTAGATGCAGGGATATCATCACAG                         TGCGCTTCTGCCATCGACAACCTGGCAGCCTTTTACTTTAATAACATTACA
genomic: GCTCACTCGAATCTGGCTTAAAAGGTCTAGATGCAGGGATATCATCACAGgtttgtctca ... ttatcggcagTGCGCTTCTGCCATCGACAACCTGGCAGCCTTTTACTTTAATAACATTACA
EST: gi|33092039|gb|CF052033.1|CF052033
EST:     GCTCACTCGAATCTGGCTTAAAAGGTCTAGATGCAGGGATATCATCACAG                         TGCGCTTCTGCCATCGACAACCTGGCAGCCTTTTACTTTAATAACATTACA
genomic: GCTCACTCGAATCTGGCTTAAAAGGTCTAGATGCAGGGATATCATCACAGgtttgtctca ... ttatcggcagTGCGCTTCTGCCATCGACAACCTGGCAGCCTTTTACTTTAATAACATTACA
EST: gi|32836639|gb|CD976317.1|CD976317
EST:     GCTCACTCGAATCTGGCTTAAAAGGTCTAGATGCAGGGATATCATCACAG                         TGCGCTTCTGCCATCGACAACCTGGCAGCCTTTTACTTTAATAACATTACA
genomic: GCTCACTCGAATCTGGCTTAAAAGGTCTAGATGCAGGGATATCATCACAGgtttgtctca ... ttatcggcagTGCGCTTCTGCCATCGACAACCTGGCAGCCTTTTACTTTAATAACATTACA