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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTGgtaagtgatgcattccaagccgattgagaatttttgtaggtctttactacctttagttaaccaagagccttctttactaccttatgtcaatcgagtaccttcttttttag

Basic information

species Zea mays
transcript GRMZM5G866918_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211198359|gb|FL237724.1|FL237724
EST:     GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTG                         GAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
genomic: GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTGgtaagtgatg ... tcttttttagGAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
EST: gi|14645980|gb|BI180169.1|BI180169
EST:     GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTG                         GAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
genomic: GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTGgtaagtgatg ... tcttttttagGAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
EST: gi|211200898|gb|FL237729.1|FL237729
EST:     GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTG                         GAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
genomic: GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTGgtaagtgatg ... tcttttttagGAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
EST: gi|15426652|gb|BI542474.1|BI542474
EST:     GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTG                         GAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
genomic: GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTGgtaagtgatg ... tcttttttagGAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
EST: gi|211200895|gb|FL237726.1|FL237726
EST:     GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTG                         GAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
genomic: GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTGgtaagtgatg ... tcttttttagGAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
EST: gi|211200899|gb|FL237730.1|FL237730
EST:     GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTG                         GAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC
genomic: GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTGgtaagtgatg ... tcttttttagGAGGATATGAGCCTATTCAGTTGCTTCTACGATTTTGTTTTCTTCATCTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATGTGATATTTGCTGATATTCCAAAGCTCATTCCATTTATTGATCTGgtaagtgatgcattccaagccgattgagaatttttgtaggtctttactacctttagttaaccaagagccttctttactaccttatgtcaatcgagtaccttcttttttag

- - - - - -  GCTGAT
- - - - - - - - - - - - - AGCTCA