1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGGGTGTCCTCTGAATCAACCCTTCCTTCAGTGGTGGGTACCACTGCAGAAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctgaggtgatcgatgaagctgatgagggtttgagagatttggaattagtttactatcttttaccttttgtccataattgtcctaggtagggtagtttttcttttcttttgtagtccttgaaaaactgtgacttctcttttcag
species | Zea mays |
transcript | GRMZM5G864001_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|76280638|gb|DV020206.1|DV020206
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|78117051|gb|DV535438.1|DV535438
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|78085722|gb|DV514115.1|DV514115
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|78114578|gb|DV532966.1|DV532966
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|71442324|gb|DR823374.1|DR823374
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|76020233|gb|DT947403.1|DT947403
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|76923784|gb|DV169660.1|DV169660
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|101382573|gb|EB813341.1|EB813341
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|71311170|gb|DR791895.1|DR791895
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGACEST: gi|71437451|gb|DR818501.1|DR818501
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
EST: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAG GATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
genomic: AAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctg ... ctcttttcagGATCTTACTCCTGTCGGAAGAGATGCTTTGTCACGAATTAGGGGTCGAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGTGTCCTCTGAATCAACCCTTCCTTCAGTGGTGGGTACCACTGCAGAAGAAAGCACTGCACTGATACCTGCTGCTTCAGAAAGTAAGGCACAAAAGgtagtggctgaggtgatcgatgaagctgatgagggtttgagagatttggaattagtttactatcttttaccttttgtccataattgtcctaggtagggtagtttttcttttcttttgtagtccttgaaaaactgtgacttctcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT