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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGAAGTGAAAAAACAAAAAAGGTTCCCCCTTTCAGTAAACTGCTTTCCAAATGGCCAACATGGGCTTTGATTTGTGCAAACGCCATGCATAGCTGGgtaacttaacatttaagttttcatcaattctttgtaagattgtgccacagacagacacattttagggaataatattttttgtctcatgatctttttcag

Basic information

species Zea mays
transcript GRMZM5G856598_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G856598_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g63290.2 (Oryza sativa), 5'ss of exon 3
AATTGGAAGTGAAAAAACAAAAAAGGTTCCCCCTTTCAGTAAACTGCTTTCCAAATGGCCAACATGGGCTTTGATTTGTGCAAACGCCATGCATAGCTGGgtaactta-acatttaagttttcatcaattctttgtaagattgtgccacagacag-acacattt-tagggaataatattttttgtctcatg--atctttttcag
|  |||| |||||| |  |  |||||| || |||||||| || || || || |||||||||||||||||||| |||| |||||| || |||||||| |||||||||   | |   |   ||| ||   ||  | ||    |   | || |  ||  |   |||  |     ||||| | ||  ||    ||  || ||||||||
ATCTGGAGGTGAAAGATTACGAAAGGTCCCTCCTTTCAGCAAGCTACTCTCTAAATGGCCAACATGGGCTTTAATTTCTGCAAATGCTATGCATAGTTGGgtaactcctataaacacacttttattggtt--tggttctgtcacgtcaaaagcattatttattcatttaagataatttcttaagtgctgtgctatatttttcag