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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGTGCACATAGTAAATGGTGATTGGGCTTCCGTCGTTTATGATTTGACTGAAATGGATGTAGTTCCACCAAAAACCAATCTACGTCGTGTGACAATGgtaattcagcaaactgcagctgtgtcgcgtatgttttatgttttcagttcagttcctcggaattgccacttatatagtccgttgttgatgtctggctgaa...

Basic information

species Zea mays
transcript GRMZM5G855200_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G855200_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g56200.1 (Oryza sativa), 5'ss of exon 11
CATAGTGCACATAGTAAATGGTGATTGGGCTTCCGTCGTTTATGATTTGACTGAAATGGATGTAGTTCCACCAAAAACCAATCTACGTCGTGTGACAATGgtaattcagcaaactgcagctgtgtcgcgtatgttttatgttttcagttcagttcctcggaattgccacttatatagtccgttgttgatgtctggctgaa-
 || || |||||||||||||| |||||||||||  | |||||||||||||||| ||||||||| |||||||||| ||| |||||||| || ||||||||||||||||| |||| |||||     |    ||| | |  |  || ||     |        ||  |   ||||| |  | |    |   |  |    |  | 
TATCGTTCACATAGTAAATGGAGATTGGGCTTCTCTTGTTTATGATTTGACTGCAATGGATGTTGTTCCACCAAGAACTAATCTACGCCGAGTGACAATGgtaattcatcaaaatgcagaatatttatttatttatggttattacaagatggaaaaaaacaaaggtt-cttatctcatactccctccgtcccaaaatataa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467317|gb|CF244366.1|CF244366
EST:     CTGAAATGGATGTAGTTCCACCAAAAACCAATCTACGTCGTGTGACAATG                         GATTTAGAGGATGCATTAGGCGAGGTAACCTTTGAAGATGGCATTCCAGAA
genomic: CTGAAATGGATGTAGTTCCACCAAAAACCAATCTACGTCGTGTGACAATGgtaattcagc ... catgtattagGATTTAGAGGATGCATTAGGCGAGGTAACCTTTGAAGATGGCATTCCAGAA