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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTGATCTTTGAGTATGTCAACAACACAGATTTCAAAGTGTTGTACCCGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGgtaaattctcatgttgttacttctgtgtaagcagctagaatgtattattctgtaaagaagtcttggtattgctaactcttgctttggactaaaaaggcta...

Basic information

species Zea mays
transcript GRMZM5G845755_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G845755_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g02350.1 (Oryza sativa), 5'ss of exon 3
AAGCTTGATCTTTGAGTATGTCAACAACACAGATTTCAAAGTGTTGTACCCGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGg-----taaattctcatgttgttacttctgtgtaagcagctagaatgtattattctgtaaagaagtcttggtattgctaactcttgctttggactaaaaaggcta
||||||||| ||||| ||||||||||||||||||||||||||| | ||||| || || |||||||||||||| || ||||| ||||| ||| |||| ||||     |   ||||||  || ||  | ||||   |    | | ||   | || |   | |  |  | |    | |      |||||  ||| | | |||      
AAGCTTGATATTTGAATATGTCAACAACACAGATTTCAAAGTGCTATACCCAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattctttctcaattttttgttactgtaacattgccaacaagaaactacttattcagcacttttccagagtatcg-ttcttg--ttgaaatgaaatctt--

upper sequence: GRMZM5G845755_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S63_208V6.1 (Physcomitrella patens), 5'ss of exon 4
AAGCTTGATCTTTGAGTATGTCAACAACACAGATTTCAAAGTGTTGTACCCGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGgtaaattctcatgttgttacttctgtgtaagcagctagaatgtat-tattctgtaaagaagtcttggtattgctaactcttgctttggactaaaaaggcta-
 ||  | || ||||||||||| |||||||| |||||||||||| | ||||| ||||| ||||| | ||||||||| || |||||  ||||| |||||||||| | |  |  | ||  |  || |   |||  |||| |  |  |   |   || | |      ||  |     | |||     | |  | | |      |  
CAGTCTTATATTTGAGTATGTGAACAACACGGATTTCAAAGTGCTCTACCCTACACTGACAGACTTTGACATTCGTTACTACATTCATGAGCTACTCAAGgtgagtaatttttttcatcttttttcttaa--agcttgggtcgacacagattggagactcacgtttctgagtgtgacttgctatctatattcatttttatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149081763|gb|EE170917.2|EE170917
EST:     CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAG                         GCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
genomic: CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGgtaaattctc ... ctggatacagGCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
EST: gi|148990948|gb|EE032377.2|EE032377
EST:     CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAG                         GCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
genomic: CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGgtaaattctc ... ctggatacagGCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
EST: gi|5268357|gb|AI770321.1|AI770321
EST:     CGACACTAACAGATTATGACATTCGATATTACATCTACGAGTTACTGAAG                         GCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
genomic: CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGgtaaattctc ... ctggatacagGCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
EST: gi|149004751|gb|EE039248.2|EE039248
EST:     CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAG                         GCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
genomic: CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGgtaaattctc ... ctggatacagGCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
EST: gi|78115139|gb|DV533527.1|DV533527
EST:     CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAG                         GCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
genomic: CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGgtaaattctc ... ctggatacagGCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
EST: gi|31355313|gb|CD439670.1|CD439670
EST:     CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAG                         GCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC
genomic: CGACACTAACAGATTATGACATTCGATATTACATCTATGAGTTACTCAAGgtaaattctc ... ctggatacagGCATTAGATTACTGCCATTCACAAGGTATTATGCACCGAGATGTGAAGCCC