1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTAAGTCGACATCTGATGTATTAGACTTGATGGAAATTGGGCAAGCAAATAGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAGgtttgtcataccaataattttttcctacatgtactttagtattgcatgaagggcgggcctggttgcagtggtgagtgctactgcaccgagtcaccaggtc...
species | Zea mays |
transcript | GRMZM5G845682_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAG TATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTA-CTCEST: gi|9733627|gb|BE512379.1|BE512379
genomic: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAGgtttgtcata ... ttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTC
EST: GAGCAGTTGGTTCAACAGCACTAAATGTAGTGAAGTAGTCGGTCACACAG TATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTCEST: gi|211520867|gb|FL034524.1|FL034524
genomic: GAGCAGTTGGTTCAACAGCACTAAATG-AGCGAAGTAGTCGGTCACACAGgtttgtcata ... ttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTC
EST: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAG TATTCTAACTGTACATGTTCGAGGGTTGGATEST: gi|61119020|gb|DN559981.1|DN559981
genomic: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAGgtttgtcata ... ttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGAT
EST: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAG TATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCT
genomic: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAGgtttgtcata ... ttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAAGTCGACATCTGATGTATTAGACTTGATGGAAATTGGGCAAGCAAATAGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAGgtttgtcataccaataattttttcctacatgtactttagtattgcatgaagggcgggcctggttgcagtggtgagtgctactgcaccgagtcaccaggtc
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG