Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAGATATTTTGAGGATATGTATGCTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCGgtaaaaaaaacatcctcctcctgcgtgctcatccatattgtaccgctcagtaaatgcatggttcccacctctcgctacgttacttcctgcagttttgagtgatttgtgtttaatctttccttcacag

Basic information

species Zea mays
transcript GRMZM5G843914_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89760783|gb|DY689055.1|DY689055
EST:     CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCG                         GAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCC
genomic: CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCGgtaaaaaaaa ... tccttcacagGAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCC
EST: gi|149102755|gb|EE188278.2|EE188278
EST:     TACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCCG                         GAAGTGGTAAAAGCTTAAG-TCAAATGTGATATCACTAAGGAAGCT
genomic: TACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCC-Ggtaaaaaaaa ... tccttcacagGAAGTGGTAAAAGCT-AAGGTCAAATGTGATATCACTAAGGAAGCT
EST: gi|148972521|gb|EE023482.2|EE023482
EST:     CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCG                         GAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCC
genomic: CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCGgtaaaaaaaa ... tccttcacagGAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCC