1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATCTGTCCTGCCCTGTAGCGCTTTTCACATATTACAACCCGATCCTGAAGCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACGgtaatatatttcttattcttgtgatgttcatttccgttaaaatatcattataggcaaatacttatcacattaatttactgaaatattagttcctccattg...
species | Zea mays |
transcript | GRMZM5G841619_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACG GTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTGEST: gi|78025299|gb|DV493686.1|DV493686
genomic: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACGgtaatatatt ... tgtcattcagGTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTG
EST: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACG GTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTGEST: gi|211342884|gb|FL240574.1|FL240574
genomic: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACGgtaatatatt ... tgtcattcagGTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTG
EST: CGTGGTGTCCCCAACTTCATGAGTATTGTTNAAGAAGCTGGGGTACATG GTCTTGTGGTA-CAGATGTYCCTTTGGAAGAGACAGATGTCTTGAGGAGTGEST: gi|211342885|gb|FL240575.1|FL240575
genomic: CGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACGgtaatatatt ... tgtcattcagGTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTG
EST: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACG GTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTGEST: gi|18661116|gb|BM501219.1|BM501219
genomic: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACGgtaatatatt ... tgtcattcagGTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTG
EST: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACG GTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTGEST: gi|32863333|gb|CF003015.1|CF003015
genomic: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACGgtaatatatt ... tgtcattcagGTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTG
EST: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAGAGAAGCTGGAGTACATG GTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTG
genomic: GCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACGgtaatatatt ... tgtcattcagGTCTTGTGGTACCAGATGTTCCTTTGGAAGAGACAGATGTCTTGAGGAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTGTCCTGCCCTGTAGCGCTTTTCACATATTACAACCCGATCCTGAAGCGTGGTGTCCCCAACTTCATGAGTATTGTTAAAGAAGCTGGGGTACACGgtaatatatttcttattcttgtgatgttcatttccgttaaaatatcattataggcaaatacttatcacattaatttactgaaatattagttcctccattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG