1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCTGATTCTCCAATGCCGAGAGGAGAGGTCGCGGTTGGTGGACACAGTATAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattctatcagaggtccagaacattatagccttagagggttgactttatttccatttcatatgacctacag
species | Zea mays |
transcript | GRMZM5G840955_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|22715395|gb|BU197739.1|BU197739
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|211013565|gb|FL361178.1|FL361178
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|60358827|gb|DN225800.1|DN225800
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|211306727|gb|FL367401.1|FL367401
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|5761807|gb|AI966960.1|AI966960
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|87156299|gb|DY401088.1|DY401088
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|26559525|gb|CA831760.1|CA831760
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|211176149|gb|FL381702.1|FL381702
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|40335028|gb|CK369098.1|CK369098
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: CAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|21809634|gb|BQ667952.1|BQ667952
genomic: CAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTCEST: gi|56382586|gb|CV985255.1|CV985255
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
EST: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAG GTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
genomic: TAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattct ... tgacctacagGTTGATGAGAGGGGCATACGCTGGTTCTACACTGGTGATATTGGTCAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGATTCTCCAATGCCGAGAGGAGAGGTCGCGGTTGGTGGACACAGTATAACAAAAGGTTATTTCAACAATGAAGCAAAGACGAACGAAGTATACAAGgtaagattctatcagaggtccagaacattatagccttagagggttgactttatttccatttcatatgacctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG