1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTTGTTGTCCATAATGATGAAGTAATAGTTAGCTGCCATAACATGGTTTTGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgctctgttgactgcctctctagcttgcaccggggcatcttaatatgtggacccttgaccatccagttggttactccttccatgctttggtgtt...
species | Zea mays |
transcript | GRMZM5G840909_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|74244654|gb|DT652568.1|DT652568
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|211533256|gb|FL397681.1|FL397681
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|211111076|gb|FL388624.1|FL388624
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|93012688|gb|EB638208.1|EB638208
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|211194115|gb|FL380863.1|FL380863
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|94474369|gb|EB703327.1|EB703327
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|89252884|gb|DY624670.1|DY624670
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|5361194|gb|AI795614.1|AI795614
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|211162917|gb|FL392799.1|FL392799
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTWACTGCGATAAGAGAG GCTTGCGAAAHGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCAEST: gi|211377789|gb|FL432426.1|FL432426
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
EST: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAG GCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
genomic: TGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgct ... tgtaaactagGCTTGCAAAAAGCTTGGGAAAATTGAGCTGTCGGATTGTGAAATTTATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGTTGTCCATAATGATGAAGTAATAGTTAGCTGCCATAACATGGTTTTGAAGAACACTGATCCAACTGCGCATGCTGAAGTAACTGCGATAAGAGAGgtaggatgctctgttgactgcctctctagcttgcaccggggcatcttaatatgtggacccttgaccatccagttggttactccttccatgctttggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttcc