1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAGTTGAAGCAACCATAATTAATGGGAAAGGGACCGAAACTGGGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctttactgcatttgattatcaacagctgtgcatgtttttagtgcgttcttgaatcaaatagctgaaagccaagaacataatttaatgagctac...
species | Zea mays |
transcript | GRMZM5G835235_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACAEST: gi|67039601|gb|CO465856.1|CO465856
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACA
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|22819758|gb|BU499848.1|BU499848
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|211304795|gb|FL143344.1|FL143344
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|87156577|gb|DY401366.1|DY401366
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|211304794|gb|FL143343.1|FL143343
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|24773942|gb|CA409196.1|CA409196
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|26559736|gb|CA831971.1|CA831971
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|32865540|gb|CF005222.1|CF005222
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|32931957|gb|CF036769.1|CF036769
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTEST: gi|32933926|gb|CF038738.1|CF038738
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
EST: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTGAAGCAACCATAATTAATGGGAAAGGGACCGAAACTGGGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgcgagtgctttactgcatttgattatcaacagctgtgcatgtttttagtgcgttcttgaatcaaatagctgaaagccaagaacataatttaatgagctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA