1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatttttcactgaatttattatggcaattgtgaaacctgttctcatttggaacttcaccaattggtcttgacgtaacacactatcttggttgcag
species | Zea mays |
transcript | GRMZM5G834205_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAEST: gi|93017403|gb|EB642923.1|EB642923
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: CATTGATAATGGCCTTCTTCCCATACTTTGTGA-GATAGTGAAGAAAAAG ACGGATTTTAC-AGTTCGAGAAAAAATATTTCTTCTGTAAGATGCAACACAEST: gi|71761883|gb|DR959820.1|DR959820
genomic: CATTGATAATGGCCTTCTTCCAATACTT-GTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTT-ACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACA
EST: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAEST: gi|50325060|gb|CO520186.1|CO520186
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAEST: gi|148952813|gb|EC898805.2|EC898805
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAEST: gi|37394180|gb|CF634361.1|CF634361
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatttttcactgaatttattatggcaattgtgaaacctgttctcatttggaacttcaccaattggtcttgacgtaacacactatcttggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA