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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCGACCAGGATGATGTGTGGGAAGATGTTTCAGATTCTCATGGGCACGCGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatcacccccctagagtttatttggaacgcagttgttaatgctaactactcttttgcagttttttttgtgtgtggctgatagcagaaatgttaaaaattaattttgccttttgatttcatctag

Basic information

species Zea mays
transcript GRMZM5G833593_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G833593_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g42970.2 (Oryza sativa), 5'ss of exon 2
TGTCGACCAGGATGATGTGTGGGAAGATGTTTCAGATTCTCATGGGCACGCGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatcacccccctagagtttatt-tggaacgcagttgttaatgctaactactcttttgcagttttttt--tgtgtgtggctgata---gcagaaatgttaaaaattaattttgccttttga---tttcatctag---------------------------------------
| | |   | |||||||| ||||| |||||||| ||||||| ||| || |  || || ||||||||||| ||| | |||||||||||||||||||| ||||||| || |     |    | || ||| ||| |         || | ||||       | || | || || |  |   | |   | ||     | | ||| |      ||| || ||  || |||   ||   | | |                                       
TATTGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGTTCACAGGCAGAACCAGTTTCATAAGgtataaacctaaggcagcaatttgattatgggaactttgccctattcctaaaggaatctgtgaaattgttatgttccatttaaatcatctttactgcaatatatttctttagttatgatttgtgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatttttcctttag

upper sequence: GRMZM5G833593_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g72200.1 (Oryza sativa), 5'ss of exon 3
TGTCGACCAGGATGATGTGTGGGAAGATGTTTCAGATTCTCATGGGCACGCGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatcacccccctagagtttatt-tggaacgcagttgttaatgctaactactcttttgcagtttttt--ttgtgtgtggctgatag---cagaaatgttaaaaattaattttgccttttgatttcatctag------------------------------------
| |||   | |||||||| ||||| |||||||| ||||||| ||| || |  || || ||||||||||| |||   |||||||||||||||||||| |||||||  | ||    | |  | |  ||| ||| |         || | |||        | || | || ||   ||   |||   | ||     | | ||| |    | ||| || ||  || |||  |||| |                                      
TATCGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGCTCACAGGCAGAACCAGTTTCATAAGgtat-gaccaaaggcatcaattggattatgggaactttgccctattcctacaggaatctgtgaaattcttgtgttccatgtaaatcatcttttctgcaatatatttatttagttatgaattgtgaactcatgtttgaaccagaatgtgtaaagctttccatttttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443400|gb|DR824450.1|DR824450
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|71327087|gb|DR800190.1|DR800190
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|211215261|gb|FL300696.1|FL300696
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGAGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|71448668|gb|DR829718.1|DR829718
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|76929776|gb|DV172157.1|DV172157
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|89253099|gb|DY624885.1|DY624885
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|76934920|gb|DV174088.1|DV174088
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|71771514|gb|DR969451.1|DR969451
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|91874026|gb|EB403983.1|EB403983
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAAC
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAAC
EST: gi|74234252|gb|DT642166.1|DT642166
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
EST: gi|71774208|gb|DR972086.1|DR972086
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA