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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATGTGTGGGAAGATGTTTCAGATTCTCATGGGCACGCGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatcacccccctagagtttatttggaacgcagttgttaatgctaactactcttttgcagttttttttgtgtgtggctgatagcagaaatgttaaaaattaattttgccttttgatttcatctag

Basic information

species Zea mays
transcript GRMZM5G833593_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G833593_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g42970.2 (Oryza sativa), 5'ss of exon 2
----------GATGATGTGTGGGAAGATGTTTCAGATTCTCATGGGCACGCGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatcacccccctagagtttatt-tggaacgcagttgttaatgctaactactcttttgcagttttttt--tgtgtgtggctgata---gcagaaatgttaaaaattaattttgccttttga---tttcatctag---------------------------------------
          |||||||| ||||| |||||||| ||||||| ||| || |  || || ||||||||||| ||| | |||||||||||||||||||| ||||||| || |     |    | || ||| ||| |         || | ||||       | || | || || |  |   | |   | ||     | | ||| |      ||| || ||  || |||   ||   | | |                                       
TATTGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGTTCACAGGCAGAACCAGTTTCATAAGgtataaacctaaggcagcaatttgattatgggaactttgccctattcctaaaggaatctgtgaaattgttatgttccatttaaatcatctttactgcaatatatttctttagttatgatttgtgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatttttcctttag

upper sequence: GRMZM5G833593_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g72200.1 (Oryza sativa), 5'ss of exon 3
----------GATGATGTGTGGGAAGATGTTTCAGATTCTCATGGGCACGCGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatcacccccctagagtttatt-tggaacgcagttgttaatgctaactactcttttgcagtttttt--ttgtgtgtggctgatag---cagaaatgttaaaaattaattttgccttttgatttcatctag------------------------------------
          |||||||| ||||| |||||||| ||||||| ||| || |  || || ||||||||||| |||   |||||||||||||||||||| |||||||  | ||    | |  | |  ||| ||| |         || | |||        | || | || ||   ||   |||   | ||     | | ||| |    | ||| || ||  || |||  |||| |                                      
TATCGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGCTCACAGGCAGAACCAGTTTCATAAGgtat-gaccaaaggcatcaattggattatgggaactttgccctattcctacaggaatctgtgaaattcttgtgttccatgtaaatcatcttttctgcaatatatttatttagttatgaattgtgaactcatgtttgaaccagaatgtgtaaagctttccatttttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91056458|gb|EB166876.1|EB166876
EST:     CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAG                         ATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA
genomic: CGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatca ... tttcatctagATGGGCTATCGGGACGGAATAACACAAGGGCAGAAGGACTCTGCCCAGGAA