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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGATGGTGAAGTTGAACAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctcgtcccttcccttgctgaggtttagtcattcttgctatttttgtatttatatatagctacatgggtatgtagactaacactctgacagact...

Basic information

species Zea mays
transcript GRMZM5G831584_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G831584_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g64262.1 (Oryza sativa), 5'ss of exon 3
ATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGATGGTGAAGTTGAACAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctcgtcccttcccttgctgaggtttagtcattcttgctattt-ttgtatttatatat---agctacatgggtatgtagactaacactctgacagact
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ATTCTGTTCCTGGTCAAGTAGAAACAGATAACAGTGATGGTGAAGTTGAACGGGTTTTGCAAACGCTGGCAAGTCTTCCTTCATCGCTTCCATCGCGCAAgtactctctcttcccttgctgttccggttttaatttatccctgctatttgcttgatttgttaatttgaactgtatgatttaacatgtttatttttgcgcc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31348702|gb|CD433059.1|CD433059
EST:     CGAGTCTTCCTTCTTCACTTCCATCACGCAA                         GTGGGCTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
genomic: CGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctc ... gtgccaccagGTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
EST: gi|29545082|gb|CB605260.1|CB605260
EST:     CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAA                         GTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
genomic: CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctc ... gtgccaccagGTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
EST: gi|71418697|gb|DR804513.1|DR804513
EST:     CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAA                         GTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
genomic: CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctc ... gtgccaccagGTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
EST: gi|29577114|gb|CB617226.1|CB617226
EST:     CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAA                         GTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
genomic: CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctc ... gtgccaccagGTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
EST: gi|74241544|gb|DT649458.1|DT649458
EST:     CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAA                         GTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
genomic: CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctc ... gtgccaccagGTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
EST: gi|60342212|gb|DN209185.1|DN209185
EST:     CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAA                         GTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
genomic: CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctc ... gtgccaccagGTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
EST: gi|60395624|gb|DN228494.1|DN228494
EST:     CAGG-TTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAA                         GTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
genomic: CAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctc ... gtgccaccagGTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
EST: gi|24763127|gb|CA398310.1|CA398310
EST:     GCGAGTCTTCCTTCTTCACTTCCATCACGCAA                         GTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA
genomic: GCGAGTCTTCCTTCTTCACTTCCATCACGCAAgtactatctc ... gtgccaccagGTGGGTTGTCGACCACATGCTCAGCCTTGGATTTTCGAAGTCTCTTTCAGA