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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTTCAGAATGGATCGGCAGTAACTTGAAGAAGGACAACGATCATGTGACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgtttagtgtgaagttctcttgtaactgtatattatttatgtatcgagaattgtttgttgacatgaatcataacatcagacaggcctatgatttgctgttaatttatgttgctgagttcaaatattgttaattttcag

Basic information

species Zea mays
transcript GRMZM5G831584_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G831584_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g64262.1 (Oryza sativa), 5'ss of exon 4
CTCTTTCAGAATGGATCGGCAGTAACTTGAAGAAGGACAACGATCATGTGACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgtttagtgtgaagttctcttgtaactgtatattattt----atgtatcgagaattgtttgt---tgacatgaat-cataacatcagacaggcctatgatttgctgttaatttatgttgctga-gttcaaatattgttaattttcag-----------------------------------------
|||||||||||||||| || || ||||| || |||||||| || |||||||| ||||| ||  ||||||||||||||||||| ||||||| ||||||||||||||||| |   |    || |||| | ||   |  |  |||    || |       ||| |   |   ||| ||   | | ||  || |  || |  | | | | |||| |   | || |   | |       | ||  |||||| |                                            
CTCTTTCAGAATGGATTGGGAGCAACTTAAAAAAGGACAATGAACATGTGACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttcacctttcc-ttttcttctgaccacacttccttttctgatttcctacccattctaaatctgtgaaatagctgcttattataaaccatgaatgttaatagctgcttgctcatatgaatcatacatcgacatgtttaattctgttttgctatctgtaaactgacgaaaattattcttgatatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24763127|gb|CA398310.1|CA398310
EST:     ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: gi|211175354|gb|FL443070.1|FL443070
EST:     ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: gi|76019610|gb|DT946780.1|DT946780
EST:     ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: gi|78082358|gb|DV510770.1|DV510770
EST:     ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTTTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: gi|211465673|gb|FL464805.1|FL464805
EST:     GCTTTCAATCTTCAGGCTGCCATAGATATGTTTAGTTCTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: GCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: gi|60395624|gb|DN228494.1|DN228494
EST:     ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: gi|86473778|gb|DY240148.1|DY240148
EST:     ACCTGGGCTTCCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: gi|31348702|gb|CD433059.1|CD433059
EST:     ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: gi|78086128|gb|DV514521.1|DV514521
EST:     ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG                         GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT