Sequence
atgc intronic sequence ATGC exonic sequenceGAGGTGCACGAAGAAAAACTTTGGCCGTTACCACGTGAGCGAGCCACCAGTTGAGCATTTGCGCGATCCACTGTACAAGACAGAGAGGGAGATCATGAAGgtatgctgggatcttcttttttcctgatctcttgactcccccccctattttgcttctccctgctaaatgtcaagatggaatctgctttgcaagttactat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g01950.1 (Oryza sativa), 5'ss of exon 3
GAGGTGCACGAAGAAAAACTTTGGCCGTTACCACGTGAGCGAGCCACCAGTTGAGCATTTGCGCGATCCACTGTACAAGACAGAGAGGGAGATCATGAAGgtatgc-tgggatcttcttttttcctgatctcttgactcccccccctattttgc--ttctccctgctaaatgtcaagatggaatctgctttgcaagttactat
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GAGGTGCACGAAGAAAAATTTTGGTCGTTACCATGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGgtatgtgtgagagtgttgtttcctctgctaatttgttctaccactctgttatgcaattatatttgtcataaagaaagattgagtgggtaatgctgcttga---
upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g01890.1 (Oryza sativa), 5'ss of exon 3
GAGGTGCACGAAGAAAAACTTTGGCCGTTACCACGTGAGCGAGCCACCAGTTGAGCATTTGCGCGATCCACTGTACAAGACAGAGAGGGAGATCATGAAGgtatgc-tgggatcttcttttttcctgatctcttgactcccccccctattttgc--ttctccctgctaaatgtcaagatggaatctgctttgcaagttactat
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GAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGgtatgtgtgagagtgttgtttcctctgctaatttgttctaccactctgttatgcaattatatttgtcataaagaaagattgagtgggtaatgctgcttga---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60340111|gb|DN207084.1|DN207084EST: TTGAGCATTTGCGCGATCCACTGTACAAGACAGAGAGGGAGATCATGAAG GTTTTCTTGACCAAGCACTACAGAAACAGGCGCGCTGATGACCCAGANNNN
genomic: TTGAGCATTTGCGCGATCCACTGTACAAGACAGAGAGGGAGATCATGAAGgtatgctggg ... cgcaccgcagGTTTTCTTGACCAAGCACTACAGAAACAGGCGCGCTGATGACCCAGATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGTGCACGAAGAAAAACTTTGGCCGTTACCACGTGAGCGAGCCACCAGTTGAGCATTTGCGCGATCCACTGTACAAGACAGAGAGGGAGATCATGAAGgtatgctgggatcttcttttttcctgatctcttgactcccccccctattttgcttctccctgctaaatgtcaagatggaatctgctttgcaagttactat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA