Sequence
atgc intronic sequence ATGC exonic sequenceCTTAAGACTCCAGGCCCTGGGTACACATGTGGGCGTGCCATTGTTGGCAGGCCTACGAAGTTTTTCACCGCGGACGGGCGCAGGGCAACCCAAGCTCTAAgtaagttgcccatgtactgaatttttacattttacttgctatcagttgcttatgtatgttctggaggtgaggtacagctacatcatattatttagtgtgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G826714_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g54750.1 (Oryza sativa), 5'ss of exon 3
CTTAAGACTCCAGGCCCTGGGTACACATGTGGGCGTGCCATTGTTGGCAGGCCTACGAAGTTTTTCACCGCGGACGGGCGCAGGGCAACCCAAGCTCTAAgtaagttgcccatgtactgaatttttacattttacttgctatcagttgcttatgtatgttctggaggtgaggtacagctacatcatattatttagtgtgt--
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CTTAAGGCCCCAGGTCCTGGGTACACATGTGGGCGTGCTATGATTGTTAGGCCTACTAAGTTTTTCACCAATGATGGGCGCAGGGCAACCCAAGCTCTAAgtaagtagctctctttactgcctgatatcaattgcttg-tactctttgagtaaatgcatt-tgcactaaacgaacaaaaatcttgcatgtttaagctaggct
upper sequence: GRMZM5G826714_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g32110.3 (Oryza sativa), 5'ss of exon 1
CTTAAGACTCCAGGCCCTGGGTACACATGTGGGCGTGCCATTGTTGGCAGGCCTACGAAGTTTTTCACCGCGGACGGGCGCAGGGCAACCCAAGCTCTAAgtaagttgcccatgtactgaatttttacattttacttgctatcagttgcttatgtatgttctggaggtg-aggtacagctacatcatattatttagtgtgt-----
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CTTAAGGCCCCAGGTCCTGGGTACACGTGCGGGCGTGCTATGATTGTCAGGCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagctcatctgttgttctttaatgtttaa-----taccaattgctttcattctttgaggaaatgcatttgcagcctaaaca-acaattgcatggttgaactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4610038|gb|AI600877.1|AI600877EST: GCCTACGAAGTTTTTCACCGCGGACGGGCGCAGGGCAACCCAAGCTCTAA TGACATGGAATGTGACCTGCACATATTCCCAATTTCTTGCTCAGAAGACTC
genomic: GCCTACGAAGTTTTTCACCGCGGACGGGCGCAGGGCAACCCAAGCTCTAAgtaagttgcc ... ttatctgcagTGACATGGAATGTGACCTGCACATATTCCCAATTTCTTGCTCAGAAGACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTAAGACTCCAGGCCCTGGGTACACATGTGGGCGTGCCATTGTTGGCAGGCCTACGAAGTTTTTCACCGCGGACGGGCGCAGGGCAACCCAAGCTCTAAgtaagttgcccatgtactgaatttttacattttacttgctatcagttgcttatgtatgttctggaggtgaggtacagctacatcatattatttagtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT