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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCCAATTTAGGTACCTTGGAGATGTTTCAATTCCCTTTGCAACTGGTGCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagattttaatcttctttatacttcaatgatgttcggctttttcccttgaaagaagatatctcaatattgctatgattatgtgcaagcttgtatatag...

Basic information

species Zea mays
transcript GRMZM5G824843_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824843_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g46510.1 (Oryza sativa), 5'ss of exon 14
GGCCCCAATTTAGGTACCTTGGAGATGTTTCAATTCCCTTTGCAACTGGTGCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagattttaatcttctttatacttcaatgatgttcggctttttcccttgaaagaagatatctcaatattgctatgatt-atgt-gcaagcttgtatatag
||||||||||||| || |||||||||||||| |||||||| || || ||||||||||||||||| |||||||| |||||| |||| || || || || |||||||   | |||||| | | | |    ||    | |  |  |     ||         ||| |     |||  ||     |||| | || ||||| |    
GGCCCCAATTTAGATATCTTGGAGATGTTTCGATTCCCTTCGCTACAGGTGCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatcaatcttttatgtgcagttatttattcccacactaagttttctttctttctatttttgctttgtgatttcccatgtcgtaatcttgtgttc--

upper sequence: GRMZM5G824843_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 14
GGCCCCAATTTAGGTACCTTGGAGATGTTTCAATTCCCTTTGCAACTGGTGCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagattttaatcttctttatacttcaatgatgttcggctttttcccttgaaagaagatatctcaatattgctatgattatgtgcaagcttgtatatag--
| || || | ||| || ||||| |||||| | ||| |   ||| ||||| || ||||||||||| || ||| | |||||| |||||||||| || ||||||||||  | |     | | |||  | || |||| ||   || | | |    |   |   ||  |   || | | |     |||    |   |  | || |  
GCCCTCAGTATAGATATCTTGGTGATGTTGCCATTGCACATGCTACTGGAGCTGTTTGGCATCGCAGACAGCTGTTTGTGGCTACACCAACCACGATTGAgtaagcatattgctctatatatgataca-tgatttttttctgtcttctgccagttaccttaaat-gctacttccacttggatgaaacaaactaaaaattgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31364251|gb|CD448606.1|CD448606
EST:     GCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGA                         GTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
genomic: GCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagatttt ... tgtttcccagGTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
EST: gi|211541873|gb|FL034149.1|FL034149
EST:     TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGA                         GTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
genomic: TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagatttt ... tgtttcccagGTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
EST: gi|211541872|gb|FL034148.1|FL034148
EST:     TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGA                         GTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
genomic: TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagatttt ... tgtttcccagGTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
EST: gi|211538865|gb|FL034144.1|FL034144
EST:     TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGA                         GTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
genomic: TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagatttt ... tgtttcccagGTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
EST: gi|71428569|gb|DR809619.1|DR809619
EST:     GCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGA                         GTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
genomic: GCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagatttt ... tgtttcccagGTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
EST: gi|211541869|gb|FL034145.1|FL034145
EST:     TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGA                         GTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
genomic: TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagatttt ... tgtttcccagGTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
EST: gi|211541870|gb|FL034146.1|FL034146
EST:     TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGA                         GTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG
genomic: TTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagatttt ... tgtttcccagGTGTGTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAG