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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtattctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag

Basic information

species Zea mays
transcript GRMZM5G823629_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtattctataagta-tattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag
 |||||| | ||||||||| |||| |||| ||||||||||||||| || || || || ||||| |||||||||||||||||||||||||||||||| ||||||| |  || ||||  |   ||  ||    | | || || ||  | | ||||||||||  ||    || |||| |||||||
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagtaactaagtcctttaatgttcacttttagaattggatgcatatactaat-ttgctcctcatgcctttttcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttgg--tattctataagta-tattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag
||||||||| |||||||| || || || | ||||||||||||| | || || || || ||||| ||||||||||||||||||||||||||||||||||||||| |   || || |||      |||||||   | | || || |  |  | | ||||||||  |  || || |||| | |||||
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagtaattttaaatccttctatattcaatgttagaatggagggcacatactaatttt-cgtttcatgcc-tcttcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgag--ggcagaaactttggtattctataagtatattgga-gttaaacgtatatactaatgctgtgtatcttgcccttttcag
|||||| || ||||| ||  |||| ||||   |  |||| ||| | || || || |||||||| |||||| | ||||||||||| |||||||||||||| |||||  ||    | ||||     |||||  ||  |||      |      | |   ||||  |   | | | ||| ||  |||
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagcttta----tctattggttcattcactaatgccttcagaagttaatattcactttttagccattgacag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtattctataagtatattgga--gttaaacgtatatactaatgctgtgtatctt-----gcccttttcag---------------
| | ||| || | ||  || | || |||| ||| ||||||||  | || || || || ||||| || ||||| ||||||||||||||||| ||||||||||| |    |     ||| |||  ||||||  || ||| |  ||       ||| ||||| | |   ||| |         |||    |               
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataa-cattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgag--ggcagaaactttggtattctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag
|||||| || ||||| ||  |||| ||||   | ||||| ||| | || || || |||||||| |||||| | ||||||||||| |||||||||||||| |||||  ||    | ||||     |   | | |  |||   |     | |    | | ||  |   | | | ||| ||  |||
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttaattcattaatgc----cttcagaagttatattcactttttagccattgacag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtatt---ctataagtatattggagttaaac---gtatatactaatgctgtgtatct-tgcccttttcag---------------------
  | || ||||| || ||  | || |||| ||| ||||||||  | || || ||||| ||||| || |||||||||||||||||||| || ||||||||||| |   |   |  |||  | ||   || | |   |||     || |||   |    |   || | |  |||| | | |  ||| |                       
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G31940.1 (Glycine max), 5'ss of exon 4
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttg-gtattctataagtatattggagttaaac---gtatatactaatgctgtgtatct-tgcccttttcag---------------------
  | || ||||| || ||  | || |||| ||| ||||||||  | || || ||||| |||||||| |||||||||||||| ||||| || ||||||||||| |    |||   |||    ||| | | |   |||   | || |||   |    |   || | |  |||| | |    ||| |                       
CCTTCCCTTACCTGATCTCATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaa--ctagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtattctataagtatattggag----ttaaacgtatatacta-atgctgtgtatcttgcccttttcag----------------
| | |||||| | ||  || | || |||| ||| ||||||||  | || || || || ||||| || ||||| ||||||||||||||||| ||||||||||| |    |     ||| |||  ||||||  || ||| |     || |  ||| |  ||| ||  | | |||  |     || |                  
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataa-cattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagg---gcagaaactttggtatt--ctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag
|||||| |||||||| ||  |||| ||||  || ||||| ||| | || || || |||||||| || ||| | ||||||||||| |||||||||||||| |||||       |||  ||   ||||      | ||  |||   |    |   | |   |||   | | |   |  || ||  |||
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattgaattttcactattggtccaaggtccattaatgc---attcagaagttaa-attttcttcttaaccattggcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttg-gtattctataa-gtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag
| | |||||  |||| ||  | ||||||    | ||||| ||  | ||||| || |||||||| |||||| | ||||||||||||||||| || |||||||| |  |      ||||  || || | ||| || | |||  |||    |  | || |  ||   | | | ||   |||  |||
TCTTCCATTTACAGAGCTTCTTAAGTTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGTGGAACTCTGTTGGGTTTTATCAGgtaaatgtgtttgctttttgtgttatgtaacgtttcttgttgtt----ggttctaatggtgtcttctcttttatgcttaacag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 2
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtat-tctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag
| | ||  | ||||| ||  | || ||||  || ||||| ||| | || || || |||||||| |||||||| ||||||||||| || || |||||||||||     | ||    |  || | | ||    || |||  | |  ||    |  |  | |    | | |  |     | ||||
TCTCCCCCTTCCAGAGCTTCTGAAATTTGTATTATTTGCGAACTTCTCTATTGTTGGAATGAATGTTAGTTTAATGTGGAACTCAGTAGGGTTCTATCAGgtatattctgattgctctgtgtgtttaagcttacattttattgtaataattgcagaagttacatctctaatttaactgtcag

upper sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggc-agaaact-ttggtattctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag-----------------
| ||||| || | || ||  | |  ||||  || ||||||||  |||| || || ||||||||||| ||||| |||||||||||||| |||||||||||||| ||     | ||||  ||   || | |     | |||   | | |  | | |   || | |     |  ||  ||||                     
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttt-tcaaagttacaagttatgttctttctcttcaaactttgatgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78079408|gb|DV507820.1|DV507820
EST:     TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: gi|76280570|gb|DV020138.1|DV020138
EST:     TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: gi|71445237|gb|DR826287.1|DR826287
EST:     TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: gi|76281274|gb|DV020842.1|DV020842
EST:     TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: gi|78111635|gb|DV530032.1|DV530032
EST:     TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: gi|60337491|gb|DN204464.1|DN204464
EST:     TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: gi|50328555|gb|CO523681.1|CO523681
EST:     TCGTCGGAATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: gi|31364467|gb|CD448822.1|CD448822
EST:     TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: gi|91051408|gb|EB161826.1|EB161826
EST:     TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG                         ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC