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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgtatatctttttgatttggtgaatcatagaagttgacaacatgtgcatgtctagctaattcatctaatttttttctttctacattaaactaaccgcatgc...

Basic information

species Zea mays
transcript GRMZM5G820727_T07
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G820727_T06 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 3
GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgtatatctttttgatttggtgaatcatagaagttgacaacatgtgcatgtctagctaattcatctaatttttttctttctacattaaactaaccg-catgc-
|||| |||||||| || || || || |||||||| || |||||  | |||||||||||||| ||||||||||||  |  |      ||| | || | || |  ||| |  | ||| ||   ||   || ||  |  |    |||| | | | || |  ||||     | ||  
GAAGCCAGTGCAATTCGGCTACACAAACATTTGACGGAGTTGACCTGATGGGTGAAAGGTTGGCAAATGAGgtacctaatgacttattgctcaaac-taaattttgtcctc-tgtacaaacctttgtagttgtttgatcgattttttgtgtgcacttgactatttatcttgtc

upper sequence: GRMZM5G820727_T06 (Zea mays), 5'ss of exon 3
lower sequence: AT4G25770.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgta-tatctttttgatttggtgaatcatagaagttgacaacatgtgcatgtctagctaattcatctaatttttttctttctacattaaactaaccgcatgc
| ||  || | ||   ||| ||   |||||||||||||||||||  ||||||||||||| |||| ||||||||| ||| |   ||  ||| ||  || |          ||| ||         |  |||   || | |||| | | |||  | |||     |         
GTAGCGAGAGTAATAGTGCAACGTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGgtagtatttggatgcattgttgtttcct------ctgtaacttgca-------acttaaa--atttgatttctatgtttgaaaatttgtgaag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772904|gb|DR970827.1|DR970827
EST:     CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAG                         GTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
genomic: CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgtatatcttt ... attattatagGTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
EST: gi|78113514|gb|DV531905.1|DV531905
EST:     CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAG                         GTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
genomic: CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgtatatcttt ... attattatagGTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
EST: gi|76020655|gb|DT947825.1|DT947825
EST:     CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAG                         GTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
genomic: CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgtatatcttt ... attattatagGTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
EST: gi|78090975|gb|DV519349.1|DV519349
EST:     CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAG                         GTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
genomic: CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgtatatcttt ... attattatagGTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
EST: gi|78082075|gb|DV510487.1|DV510487
EST:     CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAG                         GTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
genomic: CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgtatatcttt ... attattatagGTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
EST: gi|78106692|gb|DV525110.1|DV525110
EST:     CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAG                         GTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
genomic: CTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgtatatcttt ... attattatagGTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG