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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGgttagcaaatgaggtatatctttttgatttggtgaatcatagaagttgacaacatgtgcatgtctagctaattcatctaatttttttctttctacattaa...

Basic information

species Zea mays
transcript GRMZM5G820727_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 3
GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGgttagcaaatgaggtatatctttttgatttggtgaatcatagaagttgacaacatgtgcatgtctagctaattcatctaatttttttctttctacattaa---------------
|||| |||||||| || || || || |||||||| || |||||  | |||||||||||||| ||||||||||||  |  |      ||| | || | || |  ||| |  | ||| ||   ||   || ||  |  |    |||| | | | || |                 
GAAGCCAGTGCAATTCGGCTACACAAACATTTGACGGAGTTGACCTGATGGGTGAAAGGTTGGCAAATGAGgtacctaatgacttattgctcaaac-taaattttgtcctc-tgtacaaacctttgtagttgtttgatcgattttttgtgtgcacttgactatttatcttgtc

upper sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT4G25770.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGgttagcaaatgaggta-tatctttttgatttggtgaatcata-gaagttgacaacatgtgcatgtctagctaattcatctaatttttttctttctacattaa
| ||  || | ||   ||| ||   |||||||||||||||||||  ||||||||||||| |||| ||||||||| ||| |   ||  ||| ||  || |  | |  |  |||| |    |  | |   |  |   | | |   |||              
GTAGCGAGAGTAATAGTGCAACGTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGgtagtatttggatgcattgttgtttcctctgtaacttgcaactta---aaatttgatttctatgtttgaaaatttgtgaag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91872665|gb|EB402622.1|EB402622
EST:     TGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAG                         GTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG
genomic: TGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGgttagcaaat ... attattatagGTTCTATCAGTTGTAGAGCAAAGACGAGGTGTGAAGAAAATCTCGTTTGTG