1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCTGCTTGACTACATTATGTGCATATTGTGATTCTCAGCAGAGGAAGTCAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcatttgtagtttgcagtctgagtttttttttcctgcttcattcctgggatttgagaaataataattaacatcacaataattgtgaacttgcttttaagaacaatcccatttctatatagattaatcatcagccctgctttgcgtgaacag
species | Zea mays |
transcript | GRMZM5G819212_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|78074191|gb|DV502625.1|DV502625
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: GATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|87156647|gb|DY401436.1|DY401436
genomic: GATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|21809854|gb|BQ668172.1|BQ668172
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: GCTAAAATTTTACAAAC GAGAAATATCCCCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|22521085|gb|BU079896.1|BU079896
genomic: GCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|26557890|gb|CA830125.1|CA830125
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|21809855|gb|BQ668173.1|BQ668173
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|21331586|gb|BQ486967.1|BQ486967
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|87156978|gb|DY401767.1|DY401767
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|21389849|gb|BQ527898.1|BQ527898
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCAEST: gi|26559014|gb|CA831249.1|CA831249
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
EST: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAAC GAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
genomic: CAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcat ... gcgtgaacagGAGAAATATCACCTTTACTACCTTCAAGCTGCCGATATGTACCAACTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGCTTGACTACATTATGTGCATATTGTGATTCTCAGCAGAGGAAGTCAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcatttgtagtttgcagtctgagtttttttttcctgcttcattcctgggatttgagaaataataattaacatcacaataattgtgaacttgcttttaagaacaatcccatttctatatagattaatcatcagccctgctttgcgtgaacag
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