Sequence
atgc intronic sequence ATGC exonic sequenceCAAATGAACATCTCTGTCCATTGGAATCCAGGTCACTGGGAAGGCGGTGATGCTTGACGAGATCATCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAGgtaatcagtaacttgtatgttaaaatacgcacaactttgtctcaatcaaggcttagctacgaaccaagtcttcatttggaagagaggaagtagaatcgct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G818643_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g29830.1 (Oryza sativa), 5'ss of exon 5
CAAATGAACATCTCTGTCCATTGGAATCCAGGTCACTGGGAAGGCGGTGATGCTTGACGAGATCATCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAGgtaatcagtaacttgtatgttaaa-atacgcacaactttgtctcaatcaaggcttagctacgaaccaagtcttcatttggaagagaggaagtagaatcgct-------------------------------------------------------------------------
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-------------------------------GTCACCGGAAAAGCGGTGATGCTTGACGAGATCATCAACTATGTTCAGTCCCTGCAAAGACAAGTTGAGgtactgttcctctaaggttctgactatccacatttactgttgaaaattgtcatgtaggattgaatagaatcactacttatttataatttaccagagacgtgtttctagtaactaattatgtctgccatggtaaaccacaaaacggaaaatgctgaccttccttttgtattgcag
upper sequence: GRMZM5G818643_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G13860.3 (Glycine max), 5'ss of exon 5
--CAAATGAACATCTCTGTCCATTGGAATCCAGGTCACTGGGAAGGCGGTGATGCTTGACGAGATCATCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAGgta---atcagtaa-cttgtatgttaaaatacgcacaactttgtctcaa-tcaag--gcttagctacgaaccaagtcttcatttggaagagaggaagtagaatcgct
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CATTGTTTATTATTACTTTCTAT--GCTTTTAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaacttatctccctatttgtccacttgtgattcttaagtcatgtaactgatttgcactgtatattttgattctgcttaagttcagtac-------
upper sequence: GRMZM5G818643_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S68_190V6.1 (Physcomitrella patens), 5'ss of exon 3
-CAAATGAACATCTCTGTCCATTGGAATCCAGGTCACTGGGAAGGCGGTGATGCTTGACGAGATCATCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAGgta-atcagtaacttgtatgttaaaatacgcacaactttgtctcaatcaaggcttagctacgaaccaagtcttcatttg-gaagagaggaagt--agaatcgct--------------------------------
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CCTGCAGGACCTCG-TACCCGGCTGCCGCAAAGTCACCGGCAAGGCAGTCATGCTTGACGAGATCATCAACTATGTTCAATCCCTCCAACGACAAGTTGAAgtatgtctcttacccattt-tcaacgcactgctaatgctattccattcatgtcttaggcacccttcttgttatcgctagtgatgaattgtagtctagtattgagttgtatcgtacactttgttatcttttttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74233164|gb|DT641078.1|DT641078EST: TGCTTGACGAGATCTTCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAG TTTTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATA
genomic: TGCTTGACGAGATCATCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAGgtaatcagta ... catcatgcagTTCTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAATGAACATCTCTGTCCATTGGAATCCAGGTCACTGGGAAGGCGGTGATGCTTGACGAGATCATCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAGgtaatcagtaacttgtatgttaaaatacgcacaactttgtctcaatcaaggcttagctacgaaccaagtcttcatttggaagagaggaagtagaatcgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG