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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCGCCGACTTCGACCGCGGCGTCTTCCGTGGCGTGCTGGGGGGCCGCACCGCCGGCGCCGGCGGCCCCGTCCTCATCTACCCCATGAACAAGCACAAgtaagtcgtcaaatcacaaaggcacacacggaccacaagccaaaggccgcgcgcgctcatcgatctgccgccacgcacgcggaggcgcggcgcgtcgccc...

Basic information

species Zea mays
transcript GRMZM5G817173_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211116669|gb|FL470220.1|FL470220
EST:     CCTCATCTACCCCATGAACAAGCACAA                         GTGGGACCCGAGGAGCTCGGCGGTGACCCCGGACGAGGAGGTGTTCTACCT
genomic: CCTCATCTACCCCATGAACAAGCACAAgtaagtcgtc ... gtgcgcgcagGTGGGACCCGAGGAGCTCGGCGGTGACCCCGGACGAGGAGGTGTTCTACCT
EST: gi|148953329|gb|EE152817.2|EE152817
EST:     ACCGCCGGCGCCGGCGGCCCCGTCCTCATCTACCCCATGAACAAGCACAA                         GTGGGACCCGAGGAGCTCGGCGGTGACCCCGGACGAGGAGGTGTTCTACCT
genomic: ACCGCCGGCGCCGGCGGCCCCGTCCTCATCTACCCCATGAACAAGCACAAgtaagtcgtc ... gtgcgcgcagGTGGGACCCGAGGAGCTCGGCGGTGACCCCGGACGAGGAGGTGTTCTACCT