1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACCAAACTCAATGGCCGCTGATGCTCCTGCTGGAAATTCGGGTTCCTTGTCTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTTgtaagctttctagctatctagtggcatcccttctagggtagacccagtgcctgaggctcccacatgagtggtgtctggggaagggataaaccgaggcagg...
species | Zea mays |
transcript | GRMZM5G816784_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTT GTTCAGAATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAAEST: gi|211440032|gb|FK972557.1|FK972557
genomic: CTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTTgtaagctttc ... cctcttgcagGTTCAGAATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAA
EST: CTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCKAAGATATTGAACTT GTTCAGAATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAAEST: gi|74236845|gb|DT644759.1|DT644759
genomic: CTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTTgtaagctttc ... cctcttgcagGTTCAGAATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAA
EST: CTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTT GTTCAGAATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAAEST: gi|211440029|gb|FK972554.1|FK972554
genomic: CTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTTgtaagctttc ... cctcttgcagGTTCAGAATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAA
EST: CTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTT GTTCA-AATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAA
genomic: CTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTTgtaagctttc ... cctcttgcagGTTCAGAATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAAACTCAATGGCCGCTGATGCTCCTGCTGGAAATTCGGGTTCCTTGTCTGTAGCTAGTAATGACAATAAGAAGGTGTCTCGCGAAGATATTGAACTTgtaagctttctagctatctagtggcatcccttctagggtagacccagtgcctgaggctcccacatgagtggtgtctggggaagggataaaccgaggcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcccac