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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATGACTTATGCTTTACCAGGCTTCTCATATCTGGCTTTCTCTGCTACGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaatgtctcatttctgtgtttttgtatttctttatctaatgcttgttactctctccgtcccaaaacagtgaccttataggtctgggcacgggaa...

Basic information

species Zea mays
transcript GRMZM5G814310_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G814310_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 12
CTTTATGACTTATGCTTTACCAGGCTTCTCATATCTGGCTTTCTCTGCTACGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaatgt---ctcatttctgtgtttttgtatttctttatctaatgcttgttactctctccgtccc----aaaacagtgaccttataggtctgggcacgggaa
                       ||||||| || ||||| || ||||| || || || |||||||| || || |||||||||||||||||||| || |||||| | |||| |    |  |  |||||| |||    |||||||| |    ||| | | ||  | |  |      |   |  || |||   |  | |           
-----------------------GCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaatatgcatttttacctgtgtatttcctgttctttattttggacttatcagtcattactgcttgtttattgctttggcctgcaattttttttt-------

upper sequence: GRMZM5G814310_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 14
CTTTATGACTTATGCTTTACCAGGCTTCTCATATCTGGCTTTCTCTGCTACGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaatgtctcatttctgtgtttttgtattt--ctttatctaatgcttgttactctctccgtcccaaaacagtgaccttataggtctgggcacgggaa
                       | || || ||||| ||  |     | || || ||||||||||| ||| | |||||||| || |||||||||||||||||| |     || | ||| |      |      ||  |   ||| |  |    | |    || |    ||||    | | |  | |  |   |         
-----------------------GTTTTTCTTATCTCGCCCTAATGACAACCGCTGCATTCATGCAACACTTAATTTTATACTTCTGGAACCGTTTTGAGgtacgc----gtttgattccaacaactcgaagattggccaaatccagagaagctaag---cttcaattcaaagtttttatcacaaaattacag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71435715|gb|DR816765.1|DR816765
EST:     CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAG                         GTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAA
genomic: CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaat ... gctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAA