1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTAACTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAGgtgtgttcttaggtttctgatattcaatctactcgaggtcatatgattattatttgtctatatgctgatcacaacaaataacgaaatatgaacatccagg...
species | Zea mays |
transcript | GRMZM5G814159_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGAAC-GAAACTTGCTGAAGTTTTTTCAACCTGTGGACAG GTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCTEST: gi|31909457|gb|CD650928.1|CD650928
genomic: CTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAGgtgtgttctt ... tcacatgtagGTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCT
EST: GTAACTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAG GTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCTEST: gi|32914736|gb|CF019548.1|CF019548
genomic: GTAACTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAGgtgtgttctt ... tcacatgtagGTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCT
EST: GTAACTGAACAGAAACTTGTTGAANNNNNNNCAACCTGTGGACAG GTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCTEST: gi|67021641|gb|CO450390.1|CO450390
genomic: GTAACTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAGgtgtgttctt ... tcacatgtagGTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCT
EST: AACTGAACAGCAACTTGCTGAAGTTTTTTCAACCTGTGGACAG GTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCTEST: gi|31362976|gb|CD447333.1|CD447333
genomic: AACTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAGgtgtgttctt ... tcacatgtagGTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCT
EST: GTAACTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAG GTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCT
genomic: GTAACTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAGgtgtgttctt ... tcacatgtagGTGGTAGATTGCCGTATCTGTGGTGATCCTAACTCAGTGCTTCGTTTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAACTGAACAGAAACTTGCTGAAGTTTTTTCAACCTGTGGACAGgtgtgttcttaggtttctgatattcaatctactcgaggtcatatgattattatttgtctatatgctgatcacaacaaataacgaaatatgaacatccagg
- - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaataa