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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTCATAAGCTTTGGAGGAGTCACAAATGACCATAAAGATGAAGCTAAAAAGCACGGCCTGTCTATTTTCTCTTGGGACGAATTCCTGGTCATGgtaagcattgggcttcttcagcttactttatagattacaggtgttccagttgaatggtatggcaataagtgctacatgaaaccttttttctatgtaaaat...

Basic information

species Zea mays
transcript GRMZM5G812228_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G812228_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g06350.2 (Oryza sativa), 5'ss of exon 3
CGGTCATAAGCTTTGGAGGAGTCACAAATGACCATAAAGATGAAGCTAAAAAGCACGGCCTGTCTATTTTCTCTTGGGACGAATTCCTGGTCATGgtaagcattgggcttcttcagcttactttatagattacaggtgttccagttgaatggtatggcaataagtgctacatgaaaccttttttctatgtaaaat-----------------------------------------------------------------------
|  |||| ||||||||||| || ||||||||||| ||||| || |||||||| || ||  |||| || ||||| ||||| ||||||||| |||||||||    |    |  |||| |||||||  |   ||| |  || |  | || ||   |||    |  | |   || ||      |  |  | ||| |  |                                                                       
CAATCATCAGCTTTGGAGGTGTGACAAATGACCAAAAAGAGGAGGCTAAAAATCATGGGATGTCCATATTCTCATGGGAGGAATTCCTGATCATGgtaatttataaattgtttcaacttacttagtcctttatat-tggtataattcaagattatattgaagaattaaacttgtctgactaataatgtgttatttaccagttatatgacatgctaccgaaccattacaaatttacaaatgaacttgtctgacttttatgcttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28909677|gb|CB331047.1|CB331047
EST:     CTAAAAAGCACGGCCTGTCTATTTTCTCTTGGGACGAATTCCTGGTCATG                         GGTGGCTCTCATAATTTTGATCTGCCTGAAAAGAAGAGATCTGACATCTGT
genomic: CTAAAAAGCACGGCCTGTCTATTTTCTCTTGGGACGAATTCCTGGTCATGgtaagcattg ... atgcttatagGGTGGCTCTCATAATTTTGATCTGCCTGAAAAGAAGAGATCTGACATCTGT
EST: gi|211229737|gb|FL163461.1|FL163461
EST:     ATTTTCTCTTGGGACGAATTCCTGGTCATG                         GGTGGCTCTCATAATTTTGATCTGCCTGAAAAGAAGAGATCTGACATCTGT
genomic: ATTTTCTCTTGGGACGAATTCCTGGTCATGgtaagcattg ... atgcttatagGGTGGCTCTCATAATTTTGATCTGCCTGAAAAGAAGAGATCTGACATCTGT