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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCCAGGAGAGGTTTAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAGgtaagacagtatttttactacagttgactgcttaaatattttgatatattgtaacatcacattaatgtcatttttgtcaccttgatgtcggattattgaa...

Basic information

species Zea mays
transcript GRMZM5G809265_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G809265_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g31830.2 (Oryza sativa), 5'ss of exon 3
CTGGCCAGGAGAGGTTTAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAGgtaa--gacagtatttttac-tacagttgactgcttaaatattttgatatattgtaacatcacattaatgtcatttttgtcaccttga--tgtcggattattgaa
||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| ||||||| ||| | || ||| || | || |||| |||| | | | || |||| || | ||| |||||| | | | || | || | |
CTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAAGGCATTATTCTAGgtaaataacaattttgttaggtaggatcgattgctcaaat-tataaacatgttgtt---ctgcactgctgtaatttttaagatcatatcttgcagacttgtcca-

upper sequence: GRMZM5G809265_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G20970.1 (Glycine max), 5'ss of exon 3
CTGGCCAGGAGAGGTTTAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAGgtaag-acagtatttttactacagttgactgcttaaatatt----------ttgatatattgtaacatcacattaatgtcatttttgtcaccttgatgtcggattattgaa
|||| ||||| ||||| || || |||||||||||||||| ||||| || |||||||||||| | |||| | | | | ||| | || || | | ||| | | | | | ||| ||| | || |||| | || || ||
CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACAGGGAATTATTCTTGgtatgcaaaatggtttatgtgcattttttttttcctgcattagaggcctcaccgttgtggttccagctcagattgaactctattttaattctttaatttc-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211287343|gb|FL459821.1|FL459821
EST:     GTGCTCAGGGAATTATTTTAG                         TATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCGGATGTTTGGA
genomic: GTGCTCAGGGAATTATTTTAGgtaagacagt ... tcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA
EST: gi|211183625|gb|FL445775.1|FL445775
EST:     TAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAG                         TATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA
genomic: TAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAGgtaagacagt ... tcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA
EST: gi|211479208|gb|FL282801.1|FL282801
EST:     TAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAG                         TATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA
genomic: TAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAGgtaagacagt ... tcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA