1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGGgtaagcacttgatgctactctgacaaaccccgcagccagttttcaatatgttgtctgctgctttttctttgtacttgcatgatgagaaaaatttaatgatcactactaagattgcttactctgctgttcatag
species | Zea mays |
transcript | GRMZM5G801793_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG GTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGCEST: gi|211504649|gb|FL183082.1|FL183082
genomic: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGGgtaagcactt ... ctgttcatagGTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGC
EST: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG GTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGCEST: gi|24934155|gb|CA452373.1|CA452373
genomic: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGGgtaagcactt ... ctgttcatagGTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGC
EST: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG GTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGCEST: gi|32940571|gb|CF045390.1|CF045390
genomic: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGGgtaagcactt ... ctgttcatagGTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGC
EST: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG GTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGCEST: gi|6227219|gb|AW155818.1|AW155818
genomic: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGGgtaagcactt ... ctgttcatagGTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGC
EST: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG GTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATTGTTTTTTCTTTTGCEST: gi|33091106|gb|CF051100.1|CF051100
genomic: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGGgtaagcactt ... ctgttcatagGTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGC
EST: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG GTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGC
genomic: TCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGGgtaagcactt ... ctgttcatagGTATGACAGTCTTATCGTGAAGTTTGTGGGGCTTATAGTTTTTTCTTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGGgtaagcacttgatgctactctgacaaaccccgcagccagttttcaatatgttgtctgctgctttttctttgtacttgcatgatgagaaaaatttaatgatcactactaagattgcttactctgctgttcatag
- - - - - - AGAGCT
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - GCTGTT