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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGGTGTTATGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacggatcatttccttctcttgtcttcttatgcaacatgctctgcatagaggaaaaaaatctttacggctgccttttgcag

Basic information

species Zea mays
transcript GRMZM5G801369_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G801369_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g68260.1 (Oryza sativa), 5'ss of exon 2
GAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGGTGTTATGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaa-acggatcatttccttctcttgtcttcttatgcaacatgctct-gcatagaggaaaaaaatctttacggctgccttttgcag
 |||||||||||||||||| |  || ||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || ||| |||| |||||||| | ||||||||| |||||||||| ||||| | | |   ||| | |   || | ||||| | ||    |  ||  | ||||||
AAGATCAAATGAGGGCATGAGGCTCCTATTCTCAGCAGTTATTGGTGTTATGCTAGGTTACTTGTTTGGGATTTCATTTCCTACTGTCAATGTAACCAAGgtaaatatggatcatttgcttctcttgttttcttctaccagccgcttttgttcagggaaaaaagaact----gattgtatcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438212|gb|DR819262.1|DR819262
EST:     TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAG                         CTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
genomic: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacgga ... ccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
EST: gi|149075694|gb|EE164238.2|EE164238
EST:     TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAG                         CTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
genomic: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacgga ... ccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
EST: gi|149062889|gb|EE157609.2|EE157609
EST:     TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAG                         CTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
genomic: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacgga ... ccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
EST: gi|71301944|gb|DR787048.1|DR787048
EST:     TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAG                         CTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
genomic: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacgga ... ccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC