Sequence
atgc intronic sequence ATGC exonic sequenceTGAAAAGCCCTTTCTTGAGTGCACTTCTGAATTTTATGCTACGGAAGGTGTTAAATATATGCAACAATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatagatttccttatattcttcatattatttactcatgtagaaccaggcaggcacaccatttaactgataatatgcacctgagctgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 4
TGAAAAGCCCTTTCTTGAGTGCACTTCTGAATTTTATGCTACGGAAGGTGTTAAATATATGCAACAATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatagatttccttatattcttcatattatttactcatgtagaaccaggcaggcacacc-atttaactgataatatg-cacctgagctgtgcag
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TGAAAAGCCCTTTCTGGAGTGTACATCTGAATTTTATGCTACTGAAGGTGTTAAATATTTGCAGCAGTCTGATATTCCAGACTATCTCAAGCATGTGGAGgtattgataaacctcttgtatttccccttgcattttgttcacacaaaatt---caggtatacttatgcaattggtggtatttcacatgaattattcag
upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G10030.1 (Glycine max), 5'ss of exon 4
TGAAAAGCCCTTTCTTGAGTGCACTTCTGAATTTTATGCTACGGAAGGTGTTAAATATATGCAACAATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatagatttccttatattcttcatattatttactcatgtagaaccaggcaggcacaccatttaactgataatatgcacctgagctgtgcag-----------------------------------------------------------------------------------------------------------
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TGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGCGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGgt--gttttcttttccttaa----cccattgtattttatcatattggcttcagttattttggtgattctttaataa-atggat-tgtgtcattcaatttcagttttatctgacactctgactgtaaaagttatctttgtctatccttcccttgtccacattgtatacttactgcagggattttttgggtactcatttctgcag
upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 4
TGAAAAGCCCTTTCTTGAGTGCACTTCTGAATTTTATGCTACGGAAGGTGTTAAATATATGCAACAATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatagatttccttatattcttcatattatttactcatgtagaaccaggcaggcacaccatttaactgataatatgcacc-tgagctgtgcag--------------------------------------------------------------------------------------------------------
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TGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGgt--gttttcttttcctta-acccattgtattatcttattgtctttagttattttggta-attctttaataaatggattatgtcattcaatgt-cagttttatctgacactctgacaataaaagttatctttctttgtctatctttcccttgtccacattgtatactcactgcaggtatttttgggtactcatttctgcag
upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 4
TGAAAAGCCCTTTCTTGAGTGCACTTCTGAATTTTATGCTACGGAAGGTGTTAAATATATGCAACAATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatagatttccttatattcttcatattatttactcatgtagaacca--ggcaggcaca----ccatttaactgataatatgcacctgagctgtgcag-
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TGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgt---gcttcttttcccttacttttgtgtattatagttttagctttaatcattgacattcccatatgctgcttttgtattttttaacaaatggatcatgccaa
upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 4
TGAAAAGCCCTTTCTTGAGTGCACTTCTGAATTTTATGCTACGGAAGGTGTTAAATATATGCAACAATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatagatttccttatattcttcatattatttactcatgtagaacca--ggcaggcaca----ccatttaactgataatatgcacctgagctgtgcag-
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TGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCGGCGGAAGTTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgt---gcttcttttccctttcttttgtgtattataattttagctttaatcattgacattcctatgtgctgcttttgtaacttttaacaaatggatcatgccaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31353844|gb|CD438201.1|CD438201EST: ATCTGATATTCCAGACTACCTGAAGCATGTAGAG TCGAGGTTGCAAGAAGAACATGAAAGGTGCTTTCTGTATTTGGAAGCTAAC
genomic: ATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatag ... agctgtgcagTCGAGGTTGCAAGAAGAACATGAAAGGTGCATTCTGTATTTGGAAGCTAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAAAGCCCTTTCTTGAGTGCACTTCTGAATTTTATGCTACGGAAGGTGTTAAATATATGCAACAATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatagatttccttatattcttcatattatttactcatgtagaaccaggcaggcacaccatttaactgataatatgcacctgagctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC