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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGGGAATGTACAACGCATTGACTTGGTGGGAACAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCATGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattctctatggctatgtttaggagaaatattatgtgatagatacactcaaaatgtttgct...

Basic information

species Zea mays
transcript GRMZM2G558324_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G558324_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g26940.1 (Oryza sativa), 5'ss of exon 2
ACCAGGGAATGTACAACGCATTGACTTGGTGGGAACAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCATGTTGTCCTgtaagtgctg--cccatcgtatctctgttcaatttcattttcattctctatggctatgtttaggagaaatattatgtg-atagatacactcaaaatgtttgct
|||| || || ||||||  | | ||||||||||||||||| ||||| ||  | || ||||||||||||||||||||| | | ||| || | ||| || |||||||| |     ||||   | | ||  |  | |||||  |     | | | |   | | ||| |  ||    |  || |||  |    | | |||   |   
ACCAAGGCATCTACAACAGACTAACTTGGTGGGAACAAATTGATAACGGGCAGCAACTTACTCGTAATAGGAAGTTCTTGACTGTGGTACCTGTGGTGCTgtaagttccatttccatttcaac-ctaatgtacttcatcatgggattttgttgtagt-tgtagaaagaactcaaaatgtataattgttgttacaataagtat-

upper sequence: GRMZM2G558324_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G01830.1 (Glycine max), 5'ss of exon 2
ACCAGGGAATGTACAACGCATTGACTTGGTGGGAACAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCATGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattc-tctatggctatgtttaggagaaatattatgtga---tagatacactcaaaatgtttgct
|||| || || |||||   ||||||||||||||| ||  | || ||||| || |||||||||||||| |||||||| ||||  ||||||| | | || |||||||| ||  | |   |   |    |||  || || | ||    | | ||  | || | | |  | |   | | |||   |   | ||| |    | | |   
ACCAAGGGATCTACAATAGATTGACTTGGTGGGAGCAGGTAGACAATGGAAAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttct--ctaatttgcttgccatcatgtttatatacaaaggtatctgcttctggtgatgtcatagggtctatgaatgtgtgtgcacccttgttatata--

upper sequence: GRMZM2G558324_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G05940.1 (Glycine max), 5'ss of exon 2
ACCAGGGAATGTACAACGCATTGACTTGGTGGGAACAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCATGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattc-tctatggctatgtttaggagaaatattatgtgatagatacactcaaaatgtttgct-
|||| || || |||||   ||||||||||||||| ||  | || ||||| || |||||||||||||| |||||||| ||||  ||||||| | | || |||||||| ||     | | ||  |   ||| ||| || | ||    | | ||  | |  | | |  | | | | | ||| ||      |      ||   |  
ACCAAGGGATCTACAATAGATTGACTTGGTGGGAGCAGGTAGACAATGGAAAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttctctaatttgcatgcc--atcatttttatatacaaaggtatctgcttctagtgatgtcatagagtctatgaaagtgtgcgtgtgtgcgtgcaccc

upper sequence: GRMZM2G558324_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G42000.1 (Arabidopsis thaliana), 5'ss of exon 2
ACCAGGGAATGTACAACGCATTGACTTGGTGGGAACAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCATGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattctctatggcta--tgtttaggagaaatattatgtgatagatacactcaaaatgtttgct
| || ||| | || ||   |||||||||||||||||| || ||||||||||| |||||||| |||||| | || || ||||  ||||||| ||||||| ||||||| |   |  || ||||||  |   ||||  ||||   ||   ||  ||   || |   |   | |||      || ||    || |   | |||   
ATCAAGGAGTCTATAATAGATTGACTTGGTGGGAACAGATTGATAATGGCAAGCAGCTTACACGTAATCGCAAATTTCTCACCGTTGTTCCTGTTGTCTTgtaagttccttctctcatatctcattaggattttgttttgcatcatcatctcttgttgatcttgttcagtatcgaaaaattgaatgccttaccttatttt--

upper sequence: GRMZM2G558324_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G01230.1 (Arabidopsis thaliana), 5'ss of exon 2
ACCAGGGAATGTACAACGCATTGACTTGGTGGGAACAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCATGTTGTCCTgtaagtgct-gcccatcgtatctctg---ttcaat-ttcattttcattctctatggctatgtttaggagaaatattatgtgatagatacactcaaaatgtttgct
|||| ||||| ||||| |  || |||||||||||||||||||| |||||  |||||||||| || ||  | || || || |   | |||| |||||| |||||||| |  || | | ||  |||      |||    || | |  |||  | ||   ||| ||      ||||  | |    ||| | ||    | ||  |||  
ACCAAGGAATCTACAATGGTTTAACTTGGTGGGAACAAATGGACAATGGTCAACAGCTTACCCGCAACCGCAAATTTCTTACCCTAGTTCCTGTTGTTCTgtaagtcccagcaccttgttcctcaaaatctcaccactcttgtctatttccaatctatattttcttagcaaattattttctttagctgcat---atatccttg--