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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCAAGATCTTAGCAAATGCTGATGGACTTCGGTTGCTGCGCACGCTGGAAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgttatgcttgtaaccacaaaaattctgagaagaatatctgcaagcatcatctaatcaatccttgtttatgcag

Basic information

species Zea mays
transcript GRMZM2G550865_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G550865_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g14980.1 (Oryza sativa), 5'ss of exon 17
CATCAAGATCTTAGCAAATGCTGATGGACTTCGGTTGCTGCGCACGCTGGAAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtta-tgcttgtaaccac--aaaaattctgagaagaatatctgcaagcatcatctaatcaatccttgtttatgcag
 ||||||||||||||||||||||||||| | ||||||||||||||  ||||||||||||| |||||||||||||| | ||| |||||| ||||||||||||| | | ||||| ||||   |||| | |    ||  || | ||||||| | | | |||  |||| | ||  |||||
TATCAAGATCTTAGCAAATGCTGATGGAGTACGGTTGCTGCGCACATTGGAAAATCGTTCATTTGATGCTTCTCGGAGTGCGTCTGAGACTGTAACAAAGgtaagttcttgtgaccatttaaaattacaactaaatatttttgcaagcttgacccaatagatccatcttggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67042557|gb|CO468812.1|CO468812
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgttatgcttg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|19058457|gb|BM737124.1|BM737124
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGG
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgttatgcttg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|60337607|gb|DN204580.1|DN204580
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgttatgcttg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|87152018|gb|DY396807.1|DY396807
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgttatgcttg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|18963625|gb|BM660540.1|BM660540
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgttatgcttg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT